JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PROK2_chr3_71766655_71790148	0/0	t0010	1165	3	3	0	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0011	1166	2	2	0	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0012	1167	2	0	0	2	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0013	1166	1	1	0	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0014	1166	1	0	0	1	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0015	1166	1	0	1	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0016	1166	1	1	0	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0017	1167	1	0	0	0	0	1	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0018	1166	1	0	1	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0019	1166	1	1	0	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROK2_chr3_71766655_71790148	0/0	t0020	1166	1	1	0	0	0	0	copy fasta	PROK2	chr3	71766655	71790148
PROKR1_chr2_68638579_68663251	1/1	t0001	3106	144	10	34	80	6	12	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0002	3103	108	42	6	46	4	10	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0003	3106	73	14	7	39	5	8	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0004	3103	24	0	9	9	1	5	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0005	3103	15	15	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0006	3106	10	1	5	0	0	4	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0007	3099	10	0	1	8	0	1	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0008	3106	9	0	9	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0009	3106	4	0	0	0	0	4	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0010	3103	4	0	4	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0011	3103	4	4	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0012	3106	3	3	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0013	3103	3	0	0	0	0	3	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0014	3106	3	1	2	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0015	3106	3	2	1	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0016	3106	2	0	0	2	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0017	3106	2	0	1	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0018	3103	2	1	1	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0019	3099	2	0	0	2	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0020	3106	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0021	3106	1	0	1	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0022	3106	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0023	3106	1	1	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0024	3103	1	1	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0025	3103	1	1	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0026	3103	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0027	3103	1	0	0	0	0	1	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0028	3103	1	1	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0029	3103	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0030	3103	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0031	3099	1	0	1	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0032	3103	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0033	3103	1	0	0	1	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0034	3103	1	1	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0035	3103	1	1	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR1_chr2_68638579_68663251	0/0	t0036	3103	1	1	0	0	0	0	copy fasta	PROKR1	chr2	68638579	68663251
PROKR2_chr20_5294218_5321954	1/0	t0001	3292	108	16	18	60	3	10	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/1	t0002	3293	98	20	13	47	4	13	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0003	3299	55	1	18	26	3	7	copy fasta	PROKR2	chr20	5294218	5321954