JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PROKR2_chr20_5294218_5321954	0/0	t0004	3293	32	6	6	10	2	8	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0005	3295	31	2	6	22	0	1	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0006	3292	8	5	3	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0007	3293	7	1	3	0	0	3	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0008	3293	6	1	3	2	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0009	3291	5	0	0	5	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0010	3293	4	4	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0011	3299	4	4	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0012	3292	4	3	1	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0013	3293	4	4	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0014	3299	4	4	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0015	3299	4	4	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0016	3293	3	0	1	0	0	2	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0017	3299	3	3	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0018	3293	2	2	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0019	3295	2	2	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0020	3293	2	0	1	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0021	3299	2	0	1	0	1	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0022	3293	2	0	0	2	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0023	3295	2	2	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0024	3299	2	2	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0025	3292	2	0	0	2	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0026	3293	2	0	0	2	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0027	3293	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0028	3293	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0029	3293	1	0	1	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0030	3299	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0031	3292	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0032	3292	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0033	3293	1	0	0	0	0	1	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0034	3293	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0035	3293	1	0	1	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0036	3293	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0037	3293	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0038	3295	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0039	3294	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0040	3295	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0041	3295	1	0	1	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0042	3299	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0043	3293	1	0	1	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0044	3292	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0045	3292	1	1	0	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0046	3292	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0047	3292	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0048	3293	1	0	0	0	0	1	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0049	3299	1	0	0	0	1	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0050	3292	1	0	1	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0051	3293	1	0	1	0	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROKR2_chr20_5294218_5321954	0/0	t0052	3292	1	0	0	1	0	0	copy fasta	PROKR2	chr20	5294218	5321954
PROM1_chr4_15963228_16089023	0/0	t0001	1424	136	30	17	66	4	19	copy fasta	PROM1	chr4	15963228	16089023