Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACBD7_chr10_15070475_15093776	0/0	t0039	3103	1	0	1	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0040	3100	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0041	3101	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0042	3104	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0043	3100	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0044	3101	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0045	3102	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0046	3102	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0047	3102	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0048	3102	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0049	3103	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0050	3102	1	0	1	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0051	3102	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0052	3100	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0053	3100	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0054	3100	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0055	3099	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0056	3100	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0057	3102	1	0	0	0	0	1	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0058	3100	1	0	0	0	0	1	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0059	3100	1	0	1	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0060	3100	1	0	0	1	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0061	3099	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0062	3099	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	t0063	3100	1	1	0	0	0	0	copy fasta	ACBD7	chr10	15070475	15093776
ACCSL_chr11_44042981_44064977	1/1	t0001	114	444	100	74	210	16	42	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	t0002	114	1	0	0	1	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	t0003	114	1	0	0	1	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCS_chr11_44061270_44089237	1/1	t0001	878	342	89	62	141	12	36	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0002	878	57	1	5	42	3	6	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0003	878	15	0	1	14	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0004	878	6	4	1	0	0	1	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0005	878	5	0	0	4	1	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0006	878	4	0	0	3	0	1	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0007	878	3	2	1	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0008	878	2	0	0	2	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0009	878	1	0	0	1	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0010	878	1	0	0	1	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0011	878	1	0	0	1	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	t0012	878	1	0	0	1	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACD_chr16_67652512_67665260	1/1	t0001	135	248	85	39	83	10	29	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	t0002	135	20	1	13	3	0	3	copy fasta	ACD	chr16	67652512	67665260
ACE2_chrX_15556033_15605960	1/1	t0001	922	259	60	55	109	9	24	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/0	t0002	922	2	2	0	0	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/0	t0003	926	1	0	0	1	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/0	t0004	922	1	0	1	0	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/0	t0005	922	1	0	0	1	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACER1_chr19_6301142_6338612	1/1	t0001	634	384	89	71	165	11	46	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	t0002	634	6	2	1	0	1	2	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	t0003	634	2	2	0	0	0	0	copy fasta	ACER1	chr19	6301142	6338612