JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PROM1_chr4_15963228_16089023	0/1	t0002	1424	115	30	17	57	4	6	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	t0003	1424	77	2	22	41	4	8	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	1/0	t0004	1424	32	24	6	0	0	1	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	t0005	1423	5	5	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	t0006	1424	2	2	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	t0007	1424	1	0	1	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	t0008	1424	1	0	0	1	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	t0009	1424	1	0	1	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	t0010	1424	1	0	1	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	t0011	1423	1	1	0	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	t0012	1424	1	0	0	1	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM1_chr4_15963228_16089023	0/0	t0013	1424	1	0	1	0	0	0	copy fasta	PROM1	chr4	15963228	16089023
PROM2_chr2_95269449_95296302	1/1	t0001	2227	232	78	42	86	3	21	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0002	2227	115	3	26	66	4	16	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0003	2227	7	0	0	6	0	1	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0004	2212	5	1	1	0	3	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0005	2228	3	0	0	3	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0006	2225	3	0	0	1	0	2	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0007	2227	2	0	0	2	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0008	2227	1	0	1	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0009	2227	1	1	0	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0010	2227	1	0	0	0	0	1	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0011	2227	1	0	0	0	0	1	copy fasta	PROM2	chr2	95269449	95296302
PROM2_chr2_95269449_95296302	0/0	t0012	2227	1	1	0	0	0	0	copy fasta	PROM2	chr2	95269449	95296302
PROP1_chr5_177987235_178001242	0/0	t0001	784	173	22	26	99	4	22	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	t0002	784	102	23	15	53	5	6	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	1/1	t0003	784	100	42	27	18	2	9	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	t0004	784	31	0	1	22	2	6	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	t0005	784	14	2	8	0	1	3	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	t0006	780	5	5	0	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	t0007	784	4	1	1	2	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	t0008	784	4	0	4	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	t0009	780	2	2	0	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PROP1_chr5_177987235_178001242	0/0	t0010	784	1	1	0	0	0	0	copy fasta	PROP1	chr5	177987235	178001242
PRORP_chr14_35117552_35282622	0/1	t0001	4435	115	8	27	61	6	12	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0002	4434	61	8	9	28	3	13	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0003	4435	51	29	15	4	0	3	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0004	4435	17	0	8	3	1	5	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0005	4436	9	9	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	1/0	t0006	4435	7	5	0	1	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0007	4438	6	1	3	0	1	1	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0008	4436	4	2	0	1	0	1	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0009	4433	4	4	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0010	4435	3	0	0	3	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0011	4433	3	0	2	0	0	1	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0012	4432	3	3	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0013	4436	2	2	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0014	4435	2	2	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0015	4436	2	2	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0016	4435	2	2	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622