JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRORP_chr14_35117552_35282622	0/0	t0017	4432	2	2	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0018	4434	1	0	1	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0019	4435	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0020	4435	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0021	4435	1	0	1	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0022	4435	1	0	0	0	1	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0023	4435	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0024	4436	1	0	1	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0025	4435	1	0	0	1	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0026	4435	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0027	4434	1	0	1	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0028	4435	1	0	0	1	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0029	4435	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0030	4436	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0031	4436	1	0	0	0	0	1	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0032	4434	1	0	0	1	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0033	4435	1	0	0	1	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0034	4435	1	0	1	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0035	4435	1	0	1	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0036	4436	1	0	0	1	0	0	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0037	4435	1	0	0	0	0	1	copy fasta	PRORP	chr14	35117552	35282622
PRORP_chr14_35117552_35282622	0/0	t0038	4432	1	1	0	0	0	0	copy fasta	PRORP	chr14	35117552	35282622
PROS1_chr3_93868051_93978896	0/1	t0001	1342	236	55	51	91	10	28	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	1/0	t0002	1342	64	28	9	18	2	6	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	t0003	1342	6	5	1	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	t0004	1342	2	2	0	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	t0005	1342	2	0	1	1	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	t0006	1342	1	1	0	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	t0007	1342	1	1	0	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	t0008	1342	1	1	0	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROS1_chr3_93868051_93978896	0/0	t0009	1342	1	1	0	0	0	0	copy fasta	PROS1	chr3	93868051	93978896
PROSER1_chr13_39004865_39043089	1/1	t0001	2348	186	29	37	87	8	23	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0002	2350	77	25	7	34	1	10	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0003	2348	55	14	8	26	1	6	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0004	2348	13	11	2	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0005	2360	13	0	6	0	3	4	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0006	2350	9	9	0	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0007	2348	7	0	0	7	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0008	2346	6	4	2	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0009	2348	2	0	2	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0010	2350	2	1	1	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0011	2348	2	1	1	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0012	2348	1	0	0	0	0	1	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0013	2350	1	0	0	0	0	1	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0014	2348	1	1	0	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0015	2348	1	0	0	0	1	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0016	2348	1	0	0	1	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0017	2348	1	0	0	0	0	1	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0018	2348	1	1	0	0	0	0	copy fasta	PROSER1	chr13	39004865	39043089
PROSER1_chr13_39004865_39043089	0/0	t0019	2348	1	0	0	1	0	0	copy fasta	PROSER1	chr13	39004865	39043089