JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PROSER2_chr10_11818356_11877277	0/0	t0001	2068	168	14	46	80	12	16	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/1	t0002	2068	66	14	9	28	2	12	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0003	2068	20	14	2	0	1	3	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0004	2068	14	0	9	0	0	5	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0005	2069	13	0	1	12	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	1/0	t0006	2068	10	8	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0007	2068	8	8	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0008	2068	7	7	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0009	2068	6	6	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0010	2068	6	6	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0011	2068	5	5	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0012	2068	3	2	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0013	2068	3	1	1	1	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0014	2068	2	0	0	2	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0015	2068	2	0	0	2	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0016	2068	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0017	2094	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0018	2068	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0019	2069	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0020	2068	1	0	0	1	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0021	2068	1	0	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0022	2068	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0023	2068	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0024	2068	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0025	2068	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0026	2068	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0027	2068	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0028	2068	1	1	0	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0029	2068	1	0	0	0	1	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER2_chr10_11818356_11877277	0/0	t0030	2068	1	0	1	0	0	0	copy fasta	PROSER2	chr10	11818356	11877277
PROSER3_chr19_35753176_35776166	0/0	t0001	2664	82	14	12	48	3	5	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/1	t0002	2661	66	11	19	27	1	7	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0003	2660	50	12	11	24	1	2	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0004	2661	39	2	13	10	4	10	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0005	2659	27	0	0	27	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0006	2661	27	3	9	7	4	4	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0007	2664	16	8	2	1	0	5	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	1/0	t0008	2662	14	0	7	0	2	4	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0009	2665	14	0	0	13	0	1	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0010	2661	11	6	0	5	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0011	2661	5	5	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0012	2663	5	5	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0013	2660	4	4	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0014	2661	4	4	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0015	2661	4	0	0	0	0	4	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0016	2660	3	3	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0017	2664	3	2	1	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0018	2661	2	2	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0019	2661	2	0	0	0	0	2	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0020	2661	2	2	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166