JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PROSER3_chr19_35753176_35776166	0/0	t0021	2662	2	0	0	2	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0022	2662	2	1	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0023	2662	2	2	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0024	2664	2	2	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0025	2661	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0026	2663	1	0	1	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0027	2660	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0028	2660	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0029	2663	1	0	1	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0030	2661	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0031	2662	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0032	2660	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0033	2660	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0034	2660	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0035	2661	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0036	2661	1	0	0	0	0	1	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0037	2660	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0038	2661	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0039	2661	1	0	1	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0040	2661	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0041	2661	1	0	0	0	0	1	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0042	2679	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0043	2661	1	0	0	0	0	1	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0044	2660	1	0	0	0	1	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0045	2660	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0046	2662	1	0	0	0	0	1	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0047	2661	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0048	2663	1	0	1	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0049	2663	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0050	2664	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0051	2664	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0052	2662	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0053	2661	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0054	2663	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0055	2664	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0056	2664	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0057	2664	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0058	2665	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0059	2662	1	0	0	1	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROSER3_chr19_35753176_35776166	0/0	t0060	2664	1	1	0	0	0	0	copy fasta	PROSER3	chr19	35753176	35776166
PROX1_chr1_213982973_214046510	0/1	t0001	6254	44	10	9	20	0	4	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0002	6253	25	1	6	15	1	2	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0003	6255	15	0	0	10	0	5	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0004	6256	11	5	3	2	1	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0005	6255	9	1	0	6	2	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0006	6252	9	7	2	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0007	6256	8	4	1	2	0	1	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0008	6255	7	0	7	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0009	6253	7	6	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0010	6257	7	0	0	6	0	1	copy fasta	PROX1	chr1	213982973	214046510