JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PROX1_chr1_213982973_214046510	0/0	t0011	6253	7	0	0	7	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0012	6255	6	0	2	2	0	2	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0013	6253	5	0	4	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0014	6254	5	5	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0015	6258	5	5	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0016	6258	5	4	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0017	6253	4	3	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0018	6254	4	1	0	0	2	1	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0019	6260	4	2	2	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0020	6254	4	1	0	3	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0021	6253	3	0	3	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0022	6261	3	0	0	3	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0023	6254	3	0	0	0	2	1	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0024	6252	3	0	0	3	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0025	6253	2	0	2	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0026	6255	2	2	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0027	6257	2	0	2	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0028	6251	2	0	0	1	0	1	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0029	6252	2	2	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0030	6252	2	2	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0031	6262	2	1	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0032	6258	2	1	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	1/0	t0033	6255	1	0	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0034	6255	1	0	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0035	6259	1	0	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0036	6253	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0037	6255	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0038	6255	1	0	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0039	6253	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0040	6261	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0041	6259	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0042	6249	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0043	6256	1	0	0	0	1	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0044	6257	1	0	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0045	6248	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0046	6255	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0047	6238	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0048	6260	1	0	0	0	1	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0049	6260	1	0	0	0	0	1	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0050	6256	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0051	6258	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0052	6260	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0053	6240	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0054	6255	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0055	6256	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0056	6247	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0057	6265	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0058	6258	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0059	6256	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0060	6257	1	0	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510