JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PROX1_chr1_213982973_214046510	0/0	t0061	6256	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0062	6258	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0063	6260	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0064	6244	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0065	6255	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0066	6262	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0067	6252	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0068	6244	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0069	6245	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0070	6255	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0071	6254	1	0	0	0	1	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0072	6254	1	0	0	0	1	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0073	6259	1	0	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0074	6256	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0075	6254	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0076	6254	1	0	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0077	6254	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0078	6254	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0079	6255	1	0	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0080	6251	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0081	6236	1	0	1	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0082	6249	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0083	6252	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0084	6251	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0085	6249	1	1	0	0	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0086	6256	1	0	0	0	0	1	copy fasta	PROX1	chr1	213982973	214046510
PROX1_chr1_213982973_214046510	0/0	t0087	6254	1	0	0	1	0	0	copy fasta	PROX1	chr1	213982973	214046510
PROX2_chr14_74848033_74881145	1/1	t0001	2660	108	2	19	70	6	9	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0002	2660	88	19	18	43	3	5	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0003	2660	75	8	9	39	1	18	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0004	2660	40	12	15	8	1	4	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0005	2660	16	9	4	0	0	3	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0006	2660	8	8	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0007	2660	5	4	0	0	1	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0008	2660	3	2	1	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0009	2660	3	3	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0010	2660	3	0	0	3	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0011	2660	3	0	0	3	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0012	2660	2	0	0	2	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0013	2660	2	0	0	0	0	2	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0014	2660	2	2	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0015	2660	2	0	0	2	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0016	2660	2	0	0	2	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0017	2660	2	2	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0018	2660	1	0	0	0	0	1	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0019	2660	1	0	0	1	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0020	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0021	2660	1	0	0	0	0	1	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0022	2660	1	0	0	0	0	1	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0023	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145