JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PROX2_chr14_74848033_74881145	0/0	t0024	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0025	2660	1	0	0	0	0	1	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0026	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0027	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0028	2660	1	0	0	1	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0029	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0030	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0031	2660	1	0	1	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0032	2660	1	0	1	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0033	2660	1	0	0	0	0	1	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0034	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0035	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0036	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROX2_chr14_74848033_74881145	0/0	t0037	2660	1	1	0	0	0	0	copy fasta	PROX2	chr14	74848033	74881145
PROZ_chr13_113153648_113177386	0/1	t0001	295	234	51	63	80	16	23	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	1/0	t0002	295	138	30	15	78	0	14	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	t0003	295	3	3	0	0	0	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	t0004	295	1	1	0	0	0	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	t0005	295	1	1	0	0	0	0	copy fasta	PROZ	chr13	113153648	113177386
PROZ_chr13_113153648_113177386	0/0	t0006	295	1	0	0	0	0	1	copy fasta	PROZ	chr13	113153648	113177386
PRPF18_chr10_13581965_13635859	1/1	t0001	642	385	88	76	163	16	40	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	t0002	642	1	0	1	0	0	0	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	t0003	642	1	1	0	0	0	0	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	t0004	642	1	0	0	1	0	0	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	t0005	642	1	1	0	0	0	0	copy fasta	PRPF18	chr10	13581965	13635859
PRPF18_chr10_13581965_13635859	0/0	t0006	642	1	0	1	0	0	0	copy fasta	PRPF18	chr10	13581965	13635859
PRPF19_chr11_60885547_60911585	1/0	t0001	823	76	4	11	49	1	10	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/1	t0002	822	72	5	12	41	6	7	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0003	824	42	21	14	5	1	1	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0004	823	36	6	6	17	0	7	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0005	822	35	1	5	25	2	2	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0006	823	25	12	7	1	2	3	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0007	822	16	15	1	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0008	822	13	13	0	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0009	825	9	7	2	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0010	824	5	2	2	1	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0011	823	3	1	0	0	1	1	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0012	822	3	1	1	0	1	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0013	821	2	2	0	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0014	825	2	0	0	0	0	2	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0015	822	1	0	0	1	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0016	822	1	0	0	0	0	1	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0017	823	1	0	0	0	0	1	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0018	823	1	1	0	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0019	823	1	0	0	1	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0020	822	1	0	0	0	0	1	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0021	822	1	1	0	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0022	821	1	0	1	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0023	821	1	0	0	1	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF19_chr11_60885547_60911585	0/0	t0024	821	1	1	0	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585