JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRPF19_chr11_60885547_60911585	0/0	t0025	824	1	1	0	0	0	0	copy fasta	PRPF19	chr11	60885547	60911585
PRPF31_chr19_54110754_54136713	0/1	t0001	334	225	62	42	82	6	32	copy fasta	PRPF31	chr19	54110754	54136713
PRPF31_chr19_54110754_54136713	0/0	t0002	334	2	2	0	0	0	0	copy fasta	PRPF31	chr19	54110754	54136713
PRPF38A_chr1_52399602_52425836	1/1	t0001	4295	143	25	22	75	4	15	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0002	4295	51	0	8	37	2	4	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0003	4296	28	28	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0004	4295	15	3	1	7	1	3	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0005	4293	10	2	1	2	0	5	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0006	4296	10	8	2	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0007	4296	7	7	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0008	4295	3	0	0	3	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0009	4295	3	2	1	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0010	4296	3	3	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0011	4295	2	1	1	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0012	4290	2	2	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0013	4296	2	2	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0014	4293	2	2	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0015	4296	2	1	1	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0016	4296	2	1	1	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0017	4294	2	2	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0018	4295	2	0	0	2	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0019	4296	2	0	0	2	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0020	4295	2	2	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0021	4296	2	2	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0022	4295	1	0	0	1	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0023	4295	1	0	0	1	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0024	4295	1	0	0	1	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0025	4295	1	0	0	1	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0026	4295	1	1	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0027	4295	1	0	1	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0028	4290	1	1	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0029	4296	1	0	0	0	1	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0030	4296	1	0	0	0	0	1	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0031	4295	1	1	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0032	4295	1	0	1	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0033	4283	1	1	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38A_chr1_52399602_52425836	0/0	t0034	4293	1	1	0	0	0	0	copy fasta	PRPF38A	chr1	52399602	52425836
PRPF38B_chr1_108687310_108707928	0/1	t0001	3191	235	44	53	107	10	20	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	1/0	t0002	3191	57	7	13	22	6	8	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0003	3192	12	2	2	3	0	5	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0004	3191	6	5	1	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0005	3192	4	0	0	1	0	3	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0006	3191	4	0	2	0	0	2	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0007	3191	3	3	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0008	3191	3	3	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0009	3191	3	0	0	0	0	3	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0010	3191	2	0	0	2	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0011	3191	2	2	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0012	3191	2	2	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0013	3191	2	2	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928