JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRPF38B_chr1_108687310_108707928	0/0	t0014	3191	2	2	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0015	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0016	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0017	3192	1	0	0	1	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0018	3191	1	0	0	0	0	1	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0019	3181	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0020	3192	1	0	0	1	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0021	3192	1	0	0	0	0	1	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0022	3191	1	0	0	1	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0023	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0024	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0025	3180	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0026	3191	1	0	0	0	0	1	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0027	3191	1	0	1	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0028	3191	1	0	0	1	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0029	3191	1	0	0	0	0	1	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0030	3191	1	0	0	0	0	1	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0031	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0032	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0033	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0034	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0035	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0036	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0037	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0038	3191	1	1	0	0	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF38B_chr1_108687310_108707928	0/0	t0039	3191	1	0	0	1	0	0	copy fasta	PRPF38B	chr1	108687310	108707928
PRPF39_chr14_45079116_45121282	1/1	t0001	1523	158	53	28	53	12	10	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	t0002	1522	36	7	3	21	3	2	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	t0003	1522	26	24	2	0	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	t0004	1524	7	0	0	6	0	1	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	t0005	1521	6	5	0	1	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	t0006	1520	5	0	0	5	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	t0007	1521	2	0	1	0	0	1	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	t0008	1521	1	0	0	0	1	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	t0009	1522	1	0	0	1	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	t0010	1523	1	0	0	1	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF39_chr14_45079116_45121282	0/0	t0011	1522	1	1	0	0	0	0	copy fasta	PRPF39	chr14	45079116	45121282
PRPF3_chr1_150316533_150358233	1/1	t0001	363	346	77	60	152	13	42	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	t0002	363	11	11	0	0	0	0	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	t0003	363	2	0	0	0	0	2	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	t0004	363	1	1	0	0	0	0	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	t0005	363	1	0	0	0	1	0	copy fasta	PRPF3	chr1	150316533	150358233
PRPF3_chr1_150316533_150358233	0/0	t0006	363	1	1	0	0	0	0	copy fasta	PRPF3	chr1	150316533	150358233
PRPF40A_chr2_152646732_152722461	0/0	t0001	4598	116	7	24	69	6	10	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0002	4598	86	34	23	8	4	17	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	1/0	t0003	4597	45	3	4	32	1	4	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/1	t0004	4597	34	2	3	23	2	3	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0005	4598	21	0	12	0	3	6	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0006	4597	13	13	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0007	4599	7	0	6	0	0	1	copy fasta	PRPF40A	chr2	152646732	152722461