JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRPF40A_chr2_152646732_152722461	0/0	t0008	4597	7	7	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0009	4598	6	6	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0010	4597	5	5	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0011	4597	4	0	0	4	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0012	4598	3	3	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0013	4598	2	1	1	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0014	4598	2	2	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0015	4597	2	2	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0016	4597	2	0	0	2	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0017	4597	2	2	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0018	4598	2	2	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0019	4598	1	1	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0020	4598	1	1	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0021	4597	1	0	0	1	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0022	4597	1	1	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0023	4597	1	0	0	1	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0024	4597	1	0	0	1	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0025	4598	1	0	0	1	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0026	4598	1	0	0	0	0	1	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0027	4598	1	0	0	0	0	1	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0028	4598	1	0	1	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0029	4598	1	0	0	0	0	1	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0030	4597	1	1	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40A_chr2_152646732_152722461	0/0	t0031	4598	1	1	0	0	0	0	copy fasta	PRPF40A	chr2	152646732	152722461
PRPF40B_chr12_49618561_49649665	1/1	t0001	504	107	30	29	33	6	7	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	t0002	504	85	54	9	17	2	3	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF40B_chr12_49618561_49649665	0/0	t0003	502	2	2	0	0	0	0	copy fasta	PRPF40B	chr12	49618561	49649665
PRPF4B_chr6_4016300_4069983	0/1	t0001	4494	155	17	30	63	12	32	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0002	4494	84	14	16	43	4	7	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0003	4495	46	0	14	32	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0004	4495	23	20	3	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0005	4494	13	10	2	0	1	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0006	4494	11	10	1	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0007	4494	4	0	0	4	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0008	4494	3	0	2	0	1	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0009	4494	3	3	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0010	4494	3	3	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0011	4494	3	3	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	1/0	t0012	4494	2	0	1	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0013	4494	2	0	0	2	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0014	4494	1	0	0	1	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0015	4494	1	0	0	1	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0016	4495	1	1	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0017	4494	1	0	0	1	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0018	4494	1	1	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0019	4494	1	1	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0020	4494	1	0	0	0	0	1	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0021	4494	1	0	0	1	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0022	4494	1	0	0	1	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0023	4494	1	0	1	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983