JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRPF4B_chr6_4016300_4069983	0/0	t0024	4494	1	0	1	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0025	4482	1	0	0	1	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0026	4494	1	1	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0027	4494	1	1	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0028	4494	1	0	1	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4B_chr6_4016300_4069983	0/0	t0029	4495	1	1	0	0	0	0	copy fasta	PRPF4B	chr6	4016300	4069983
PRPF4_chr9_113270658_113297905	1/1	t0001	1332	221	40	53	96	11	19	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0002	1332	82	2	6	64	0	10	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0003	1332	60	14	7	23	3	13	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0004	1332	19	0	6	12	0	1	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0005	1332	14	14	0	0	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0006	1332	13	11	2	0	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0007	1332	4	4	0	0	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0008	1332	3	0	0	3	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0009	1332	2	2	0	0	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0010	1332	1	1	0	0	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0011	1332	1	0	0	1	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0012	1332	1	0	1	0	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0013	1332	1	0	0	1	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0014	1332	1	0	1	0	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0015	1332	1	0	0	0	0	1	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0016	1332	1	1	0	0	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF4_chr9_113270658_113297905	0/0	t0017	1332	1	1	0	0	0	0	copy fasta	PRPF4	chr9	113270658	113297905
PRPF6_chr20_63976132_64038100	1/0	t0001	222	254	69	59	81	12	32	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/1	t0002	222	21	1	7	3	0	9	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	t0003	222	5	0	2	0	2	1	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	t0004	222	5	5	0	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	t0005	222	4	4	0	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	t0006	222	2	0	0	0	0	2	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	t0007	222	2	2	0	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF6_chr20_63976132_64038100	0/0	t0008	222	1	1	0	0	0	0	copy fasta	PRPF6	chr20	63976132	64038100
PRPF8_chr17_1645629_1689867	0/1	t0001	273	281	93	40	103	12	32	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	t0002	273	6	0	0	0	0	6	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	t0003	273	3	0	0	3	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPF8_chr17_1645629_1689867	0/0	t0004	273	1	1	0	0	0	0	copy fasta	PRPF8	chr17	1645629	1689867
PRPH2_chr6_42691598_42727597	0/0	t0001	1963	108	23	14	53	4	14	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0002	1960	97	12	17	64	0	4	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	1/0	t0003	1961	71	15	21	24	3	7	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/1	t0004	1963	61	18	13	14	3	12	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0005	1962	6	1	0	5	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0006	1962	6	1	3	1	1	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0007	1961	6	6	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0008	1962	5	1	2	2	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0009	1963	4	0	0	4	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0010	1960	3	0	0	2	0	1	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0011	1963	2	2	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0012	1961	2	2	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0013	1961	2	2	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0014	1963	2	2	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0015	1960	1	0	1	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597