JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRPH2_chr6_42691598_42727597	0/0	t0016	1960	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0017	1960	1	0	0	0	1	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0018	1960	1	0	0	1	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0019	1960	1	0	1	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0020	1961	1	0	0	0	0	1	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0021	1963	1	0	0	0	0	1	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0022	1963	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0023	1963	1	0	0	1	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0024	1963	1	0	0	1	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0025	1963	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0026	1960	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0027	1961	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0028	1961	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0029	1961	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0030	1962	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH2_chr6_42691598_42727597	0/0	t0031	1960	1	1	0	0	0	0	copy fasta	PRPH2	chr6	42691598	42727597
PRPH_chr12_49290147_49303686	1/1	t0001	388	364	78	66	152	18	48	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	t0002	388	17	15	2	0	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPH_chr12_49290147_49303686	0/0	t0003	388	1	1	0	0	0	0	copy fasta	PRPH	chr12	49290147	49303686
PRPS1L1_chr7_18021770_18032846	1/1	t0001	121	459	89	84	218	16	50	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	t0002	121	1	0	0	1	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	t0003	121	1	0	0	1	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1L1_chr7_18021770_18032846	0/0	t0004	121	1	1	0	0	0	0	copy fasta	PRPS1L1	chr7	18021770	18032846
PRPS1_chrX_107623510_107656026	1/1	t0001	1114	223	58	36	96	11	20	copy fasta	PRPS1	chrX	107623510	107656026
PRPS1_chrX_107623510_107656026	0/0	t0002	1114	17	15	1	0	0	1	copy fasta	PRPS1	chrX	107623510	107656026
PRPS1_chrX_107623510_107656026	0/0	t0003	1114	1	0	0	0	0	1	copy fasta	PRPS1	chrX	107623510	107656026
PRPS1_chrX_107623510_107656026	0/0	t0004	1111	1	0	0	0	0	1	copy fasta	PRPS1	chrX	107623510	107656026
PRPS1_chrX_107623510_107656026	0/0	t0005	1114	1	1	0	0	0	0	copy fasta	PRPS1	chrX	107623510	107656026
PRPS1_chrX_107623510_107656026	0/0	t0006	1114	1	0	0	1	0	0	copy fasta	PRPS1	chrX	107623510	107656026
PRPS1_chrX_107623510_107656026	0/0	t0007	1114	1	0	1	0	0	0	copy fasta	PRPS1	chrX	107623510	107656026
PRPS2_chrX_12786412_12829222	0/0	t0001	1514	248	28	44	142	6	28	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/1	t0002	1515	35	19	7	1	3	4	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0003	1517	11	11	0	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0004	1516	6	2	4	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0005	1516	6	3	1	0	0	2	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0006	1519	4	4	0	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0007	1517	4	3	1	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	1/0	t0008	1513	3	0	1	1	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0009	1515	3	3	0	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0010	1517	2	0	2	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0011	1518	2	2	0	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0012	1518	2	0	0	2	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0013	1514	1	0	0	1	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0014	1515	1	0	0	1	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0015	1518	1	1	0	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0016	1514	1	0	0	1	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0017	1514	1	0	0	1	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0018	1517	1	1	0	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0019	1518	1	0	0	1	0	0	copy fasta	PRPS2	chrX	12786412	12829222
PRPS2_chrX_12786412_12829222	0/0	t0020	1517	1	1	0	0	0	0	copy fasta	PRPS2	chrX	12786412	12829222