JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRPSAP1_chr17_76304478_76358916	1/1	t0001	2278	104	10	27	38	10	17	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0002	2278	70	4	12	46	3	5	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0003	2279	39	8	5	17	0	9	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0004	2279	34	2	9	11	3	9	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0005	2278	19	17	1	0	0	1	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0006	2107	16	5	1	10	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0007	2108	13	10	3	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0008	2277	6	1	0	4	0	1	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0009	2277	5	5	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0010	2278	5	5	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0011	2107	4	0	0	4	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0012	2277	4	4	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0013	2108	4	0	0	4	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0014	2278	3	2	1	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0015	2280	3	3	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0016	2277	3	3	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0017	2279	3	2	1	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0018	2277	3	0	0	3	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0019	2278	2	2	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0020	2280	2	0	0	1	0	1	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0021	2279	2	2	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0022	2277	2	1	1	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0023	2279	2	1	0	1	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0024	2278	1	1	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0025	2278	1	1	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0026	2277	1	1	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0027	2278	1	0	0	1	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0028	2279	1	0	0	1	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0029	2278	1	0	1	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0030	2279	1	0	1	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0031	2278	1	0	0	1	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0032	2277	1	1	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0033	2278	1	0	0	1	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0034	2278	1	0	1	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0035	2278	1	1	0	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0036	2278	1	0	0	1	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0037	2279	1	0	0	1	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0038	2278	1	0	1	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0039	2278	1	0	0	1	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0040	2277	1	0	1	0	0	0	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP1_chr17_76304478_76358916	0/0	t0041	2278	1	0	0	0	0	1	copy fasta	PRPSAP1	chr17	76304478	76358916
PRPSAP2_chr17_18853131_18936287	1/1	t0001	849	181	32	31	93	5	18	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	t0002	849	127	28	31	50	4	14	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	t0003	849	26	16	8	0	0	2	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	t0004	849	24	5	7	7	2	3	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	t0005	849	23	4	2	13	1	3	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	t0006	849	6	6	0	0	0	0	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	t0007	849	2	0	0	1	0	1	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	t0008	849	1	0	1	0	0	0	copy fasta	PRPSAP2	chr17	18853131	18936287
PRPSAP2_chr17_18853131_18936287	0/0	t0009	849	1	1	0	0	0	0	copy fasta	PRPSAP2	chr17	18853131	18936287