JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRPSAP2_chr17_18853131_18936287	0/0	t0010	849	1	0	0	0	0	1	copy fasta	PRPSAP2	chr17	18853131	18936287
PRR11_chr17_59150746_59211709	0/1	t0001	5144	51	11	14	12	4	9	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0002	5144	31	4	3	16	3	5	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0003	5144	22	7	6	8	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0004	5147	21	1	1	11	2	6	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0005	5145	21	3	8	7	0	3	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	1/0	t0006	5144	16	0	4	9	1	1	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0007	5144	9	0	3	6	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0008	5144	9	9	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0009	5144	8	8	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0010	5144	6	0	5	0	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0011	5145	5	0	0	5	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0012	5145	5	1	0	3	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0013	5148	5	0	1	1	0	3	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0014	5145	4	3	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0015	5144	4	0	0	4	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0016	5143	4	1	0	2	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0017	5145	3	0	1	2	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0018	5145	3	3	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0019	5143	3	0	1	2	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0020	5145	3	0	0	3	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0021	5144	3	2	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0022	5145	3	1	2	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0023	5145	3	3	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0024	5144	2	2	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0025	5147	2	0	0	2	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0026	5144	2	0	2	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0027	5144	2	1	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0028	5146	2	2	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0029	5145	2	2	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0030	5144	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0031	5144	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0032	5144	1	0	0	0	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0033	5144	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0034	5144	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0035	5144	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0036	5144	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0037	5144	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0038	5147	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0039	5144	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0040	5144	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0041	5145	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0042	5148	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0043	5147	1	0	0	0	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0044	5144	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0045	5145	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0046	5145	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0047	5144	1	0	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0048	5143	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0049	5147	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709