JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR11_chr17_59150746_59211709	0/0	t0050	5144	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0051	5144	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0052	5144	1	0	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0053	5145	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0054	5144	1	0	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0055	5145	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0056	5144	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0057	5144	1	0	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0058	5144	1	0	0	1	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0059	5144	1	0	0	0	0	1	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0060	5144	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0061	5144	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0062	5147	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0063	5145	1	1	0	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0064	5143	1	0	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR11_chr17_59150746_59211709	0/0	t0065	5144	1	0	1	0	0	0	copy fasta	PRR11	chr17	59150746	59211709
PRR12_chr19_49586182_49631439	1/1	t0001	1306	258	72	48	91	12	33	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0002	1302	28	6	9	13	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0003	1307	10	1	3	3	0	3	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0004	1303	7	0	1	0	0	6	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0005	1302	4	4	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0006	1306	3	3	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0007	1306	3	1	2	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0008	1306	3	3	0	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0009	1306	2	0	0	0	0	2	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0010	1306	1	0	1	0	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0011	1306	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0012	1280	1	0	0	0	0	1	copy fasta	PRR12	chr19	49586182	49631439
PRR12_chr19_49586182_49631439	0/0	t0013	1306	1	0	0	1	0	0	copy fasta	PRR12	chr19	49586182	49631439
PRR13_chr12_53436734_53451638	1/1	t0001	659	257	44	48	113	12	38	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	t0002	659	86	40	13	30	0	3	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	t0003	659	32	1	6	20	2	3	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	t0004	659	6	4	2	0	0	0	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	t0005	659	4	0	0	0	2	2	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	t0006	659	1	1	0	0	0	0	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	t0007	659	1	0	1	0	0	0	copy fasta	PRR13	chr12	53436734	53451638
PRR13_chr12_53436734_53451638	0/0	t0008	659	1	0	0	1	0	0	copy fasta	PRR13	chr12	53436734	53451638
PRR14L_chr22_31676347_31755132	0/0	t0001	4371	94	20	11	40	5	18	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	1/0	t0002	4372	77	2	19	42	5	8	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/1	t0003	4373	26	2	4	15	1	3	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0004	4372	22	10	3	7	2	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0005	4373	16	8	7	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0006	4373	8	8	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0007	4372	7	5	1	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0008	4371	5	4	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0009	4371	5	5	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0010	4371	4	3	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0011	4373	4	0	0	0	0	4	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0012	4374	4	0	0	3	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0013	4371	4	4	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132