JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR14L_chr22_31676347_31755132	0/0	t0014	4372	3	3	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0015	4372	3	3	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0016	4374	3	3	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0017	4372	3	0	1	0	0	2	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0018	4372	2	0	2	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0019	4371	2	1	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0020	4374	2	0	1	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0021	4372	2	0	1	0	1	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0022	4372	2	0	0	2	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0023	4373	1	0	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0024	4373	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0025	4372	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0026	4373	1	0	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0027	4372	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0028	4371	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0029	4372	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0030	4371	1	0	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0031	4371	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0032	4371	1	0	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0033	4371	1	0	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0034	4371	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0035	4373	1	1	0	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0036	4371	1	0	1	0	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0037	4372	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0038	4372	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0039	4372	1	0	0	1	0	0	copy fasta	PRR14L	chr22	31676347	31755132
PRR14L_chr22_31676347_31755132	0/0	t0040	4372	1	0	0	0	0	1	copy fasta	PRR14L	chr22	31676347	31755132
PRR14_chr16_30645960_30661413	1/1	t0001	321	294	84	64	102	14	28	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	t0002	321	1	0	0	1	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR14_chr16_30645960_30661413	0/0	t0003	321	1	0	0	1	0	0	copy fasta	PRR14	chr16	30645960	30661413
PRR15L_chr17_47946967_47962883	0/1	t0001	1209	154	30	24	81	9	9	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	1/0	t0002	1213	106	37	16	35	4	13	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0003	1213	69	7	21	30	2	9	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0004	1213	46	5	17	14	2	8	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0005	1213	8	8	0	0	0	0	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0006	1213	4	3	1	0	0	0	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0007	1213	3	3	0	0	0	0	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0008	1213	1	0	0	0	0	1	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0009	1209	1	0	0	0	0	1	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0010	1209	1	0	0	1	0	0	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0011	1209	1	0	0	0	1	0	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0012	1213	1	1	0	0	0	0	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0013	1209	1	0	0	1	0	0	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0014	1213	1	0	0	0	0	1	copy fasta	PRR15L	chr17	47946967	47962883
PRR15L_chr17_47946967_47962883	0/0	t0015	1213	1	0	1	0	0	0	copy fasta	PRR15L	chr17	47946967	47962883
PRR15_chr7_29558835_29572293	0/0	t0001	1262	163	35	27	87	3	11	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/1	t0002	1262	78	11	7	42	3	14	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	1/0	t0003	1263	68	23	11	30	0	3	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0004	1262	51	11	16	14	4	6	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0005	1263	46	0	7	37	0	2	copy fasta	PRR15	chr7	29558835	29572293