JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR15_chr7_29558835_29572293	0/0	t0006	1262	21	1	8	4	3	5	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0007	1262	5	5	0	0	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0008	1262	4	0	3	0	0	1	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0009	1262	4	1	2	0	0	1	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0010	1262	3	3	0	0	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0011	1262	2	0	0	0	1	1	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0012	1262	2	0	0	2	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0013	1262	1	1	0	0	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0014	1262	1	1	0	0	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0015	1262	1	1	0	0	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0016	1263	1	0	0	1	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0017	1262	1	0	0	1	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0018	1262	1	0	1	0	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR15_chr7_29558835_29572293	0/0	t0019	1262	1	1	0	0	0	0	copy fasta	PRR15	chr7	29558835	29572293
PRR16_chr5_120459300_120692314	0/0	t0001	793	151	77	37	16	9	12	copy fasta	PRR16	chr5	120459300	120692314
PRR16_chr5_120459300_120692314	0/0	t0002	793	12	1	2	6	1	2	copy fasta	PRR16	chr5	120459300	120692314
PRR16_chr5_120459300_120692314	0/0	t0003	793	3	3	0	0	0	0	copy fasta	PRR16	chr5	120459300	120692314
PRR16_chr5_120459300_120692314	0/0	t0004	793	2	2	0	0	0	0	copy fasta	PRR16	chr5	120459300	120692314
PRR16_chr5_120459300_120692314	0/0	t0005	793	1	0	1	0	0	0	copy fasta	PRR16	chr5	120459300	120692314
PRR16_chr5_120459300_120692314	0/0	t0006	793	1	1	0	0	0	0	copy fasta	PRR16	chr5	120459300	120692314
PRR18_chr6_166300300_166313392	0/0	t0001	2208	180	24	40	97	6	13	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/1	t0002	2206	103	15	10	51	8	18	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	1/0	t0003	2206	53	7	17	17	1	10	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0004	2206	23	9	0	12	0	2	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0005	2207	8	8	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0006	2206	7	7	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0007	2206	6	6	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0008	2206	6	0	3	0	1	2	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0009	2205	5	5	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0010	2208	3	0	2	1	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0011	2208	3	0	3	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0012	2203	3	0	3	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0013	2206	2	2	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0014	2206	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0015	2206	1	0	1	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0016	2206	1	0	0	1	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0017	2206	1	0	0	1	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0018	2206	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0019	2206	1	0	1	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0020	2206	1	0	0	1	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0021	2208	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0022	2206	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0023	2206	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0024	2206	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0025	2206	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0026	2206	1	0	0	0	0	1	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0027	2206	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0028	2206	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0029	2208	1	0	0	0	0	1	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0030	2208	1	0	0	0	0	1	copy fasta	PRR18	chr6	166300300	166313392