JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR18_chr6_166300300_166313392	0/0	t0031	2206	1	0	0	1	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0032	2206	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR18_chr6_166300300_166313392	0/0	t0033	2206	1	1	0	0	0	0	copy fasta	PRR18	chr6	166300300	166313392
PRR19_chr19_42297132_42315814	1/1	t0001	453	275	82	66	85	8	32	copy fasta	PRR19	chr19	42297132	42315814
PRR19_chr19_42297132_42315814	0/0	t0002	453	2	2	0	0	0	0	copy fasta	PRR19	chr19	42297132	42315814
PRR19_chr19_42297132_42315814	0/0	t0003	453	1	0	0	1	0	0	copy fasta	PRR19	chr19	42297132	42315814
PRR20A_chr13_57135918_57148939	0/0	t0000	0	3	0	1	0	0	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0001	1184	39	9	10	15	1	4	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0002	1183	34	11	6	13	2	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0003	1182	31	12	6	13	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0004	1185	21	2	3	14	0	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0005	1188	18	0	2	14	0	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0006	1187	15	0	1	14	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0007	1181	14	5	3	6	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0008	1182	11	0	3	0	2	6	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0009	1181	10	0	4	0	1	5	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0010	1187	10	0	4	4	0	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0011	1183	9	9	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0012	1182	9	0	7	0	1	1	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0013	1183	9	1	3	0	2	3	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0014	1184	8	8	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0015	1186	7	0	0	5	0	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0016	1184	6	0	1	4	1	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0017	1185	6	0	1	5	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0018	1181	5	5	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0019	1186	5	0	0	5	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0020	1182	4	4	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0021	1182	4	4	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0022	1183	4	0	3	0	0	1	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0023	1185	4	0	0	4	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0024	1186	4	1	1	0	0	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0025	1185	3	1	0	2	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0026	1184	3	1	2	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0027	1184	2	0	0	0	0	2	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0028	1181	2	0	0	2	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0029	1187	2	0	0	2	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0030	1185	2	1	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0031	1180	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0032	1182	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0033	1183	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0034	1184	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0035	1182	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0036	1182	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0037	1182	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0038	1182	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0039	1182	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0040	1184	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0041	1181	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0042	1184	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0043	1182	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939