JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR20A_chr13_57135918_57148939	0/0	t0044	1183	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0045	1184	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0046	1185	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0047	1174	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0048	1184	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0049	1184	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0050	1185	1	0	0	0	0	1	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0051	1185	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0052	1186	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0053	1184	1	0	0	1	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0054	1186	1	1	0	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0055	1188	1	0	0	0	0	1	copy fasta	PRR20A	chr13	57135918	57148939
PRR20A_chr13_57135918_57148939	0/0	t0056	1185	1	0	1	0	0	0	copy fasta	PRR20A	chr13	57135918	57148939
PRR20B_chr13_57142488_57155509	0/0	t0001	1182	32	7	12	10	2	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0002	1183	30	10	3	9	3	5	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0003	1184	16	1	4	8	0	3	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0004	1181	12	7	0	3	1	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0005	1184	10	0	1	8	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0006	1185	9	0	0	8	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0007	1183	5	0	4	0	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0008	1183	5	5	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0009	1182	4	1	2	0	1	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0010	1187	4	0	0	4	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0011	1182	3	0	3	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0012	1185	3	0	0	3	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0013	1181	2	0	0	0	1	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0014	1181	2	1	1	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0015	1182	2	0	1	0	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0016	1183	2	0	1	0	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0017	1184	2	0	2	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0018	1184	2	0	0	2	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0019	1185	2	0	1	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0020	1183	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0021	1183	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0022	1181	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0023	1183	1	0	0	0	1	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0024	1184	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0025	1182	1	0	1	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0026	1182	1	0	1	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0027	1182	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0028	1183	1	0	0	0	1	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0029	1181	1	0	0	0	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0030	1182	1	0	1	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0031	1184	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0032	1181	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0033	1183	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0034	1182	1	1	0	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0035	1186	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0036	1186	1	0	0	0	0	1	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0037	1187	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509