JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR20B_chr13_57142488_57155509	0/0	t0038	1186	1	0	0	1	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0039	1184	1	0	1	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20B_chr13_57142488_57155509	0/0	t0040	1184	1	0	1	0	0	0	copy fasta	PRR20B	chr13	57142488	57155509
PRR20C_chr13_57149061_57162082	0/0	t0001	1183	25	4	9	6	0	6	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0002	1184	18	1	6	11	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0003	1182	15	4	4	2	3	2	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0004	1181	9	3	4	2	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0005	1187	7	0	0	7	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0006	1185	6	1	3	2	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0007	1183	5	0	1	0	2	2	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0008	1184	4	0	0	3	0	1	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0009	1184	3	3	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0010	1186	3	1	1	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0011	1183	3	0	2	0	0	1	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0012	1184	3	1	1	0	0	1	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0013	1184	3	0	1	2	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0014	1182	2	0	1	0	0	1	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0015	1183	2	0	1	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0016	1185	2	0	0	1	1	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0017	1185	2	0	1	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0018	1188	2	0	0	2	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0019	1184	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0020	1182	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0021	1186	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0022	1180	1	0	1	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0023	1181	1	1	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0024	1180	1	0	0	0	0	1	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0025	1182	1	0	0	0	1	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0026	1182	1	1	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0027	1182	1	1	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0028	1187	1	1	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0029	1182	1	0	0	0	0	1	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0030	1182	1	0	1	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0031	1181	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0032	1181	1	0	1	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0033	1182	1	0	1	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0034	1182	1	0	0	0	1	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0035	1183	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0036	1186	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0037	1183	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0038	1186	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0039	1184	1	1	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0040	1185	1	1	0	0	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20C_chr13_57149061_57162082	0/0	t0041	1197	1	0	0	1	0	0	copy fasta	PRR20C	chr13	57149061	57162082
PRR20D_chr13_57155632_57168653	0/0	t0000	0	1	0	0	1	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0001	1183	28	5	10	7	0	6	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0002	1182	21	5	6	9	0	1	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0003	1184	17	1	5	6	0	5	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0004	1185	12	0	4	7	0	1	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0005	1181	10	4	1	4	0	1	copy fasta	PRR20D	chr13	57155632	57168653