Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP6V1C1_chr8_103016083_103078051	0/0	t0031	4487	1	1	0	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	t0032	4487	1	1	0	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	t0033	4487	1	0	1	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	t0034	4487	1	1	0	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	t0035	4487	1	1	0	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	t0036	4487	1	1	0	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	t0037	4487	1	1	0	0	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	t0038	4487	1	0	0	1	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	t0039	4487	1	0	0	0	0	1	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C1_chr8_103016083_103078051	0/0	t0040	4487	1	0	0	1	0	0	copy fasta	ATP6V1C1	chr8	103016083	103078051
ATP6V1C2_chr2_10716630_10790110	1/1	t0001	1976	134	22	23	75	3	9	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0002	1975	125	6	32	59	5	23	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0003	1975	20	16	4	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0004	1975	16	16	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0005	1975	15	2	2	0	1	10	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0006	1976	9	8	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0007	1975	6	5	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0008	1975	5	4	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0009	1975	3	0	3	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0010	1976	2	1	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0011	1975	2	0	0	2	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0012	1975	2	2	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0013	1975	2	2	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0014	1975	1	0	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0015	1976	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0016	1975	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0017	1975	1	0	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0018	1975	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0019	1976	1	0	0	1	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0020	1976	1	0	0	0	1	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0021	1975	1	0	0	1	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0022	1975	1	0	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0023	1975	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0024	1976	1	0	1	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0025	1975	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1C2_chr2_10716630_10790110	0/0	t0026	1975	1	1	0	0	0	0	copy fasta	ATP6V1C2	chr2	10716630	10790110
ATP6V1D_chr14_67332872_67364804	1/1	t0001	856	216	50	51	87	7	19	copy fasta	ATP6V1D	chr14	67332872	67364804
ATP6V1D_chr14_67332872_67364804	0/0	t0002	856	128	37	18	63	1	9	copy fasta	ATP6V1D	chr14	67332872	67364804
ATP6V1D_chr14_67332872_67364804	0/0	t0003	856	2	0	2	0	0	0	copy fasta	ATP6V1D	chr14	67332872	67364804
ATP6V1D_chr14_67332872_67364804	0/0	t0004	856	1	1	0	0	0	0	copy fasta	ATP6V1D	chr14	67332872	67364804
ATP6V1D_chr14_67332872_67364804	0/0	t0005	856	1	0	1	0	0	0	copy fasta	ATP6V1D	chr14	67332872	67364804
ATP6V1E1_chr22_17587136_17633749	1/1	t0001	653	191	23	39	91	9	27	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	t0002	653	66	18	14	29	0	5	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	t0003	653	52	34	3	9	5	1	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	t0004	653	22	2	7	8	0	5	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	t0005	653	10	4	0	5	0	1	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	t0006	653	8	8	0	0	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	t0007	653	5	0	2	3	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	t0008	653	5	0	1	4	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749
ATP6V1E1_chr22_17587136_17633749	0/0	t0009	653	4	3	1	0	0	0	copy fasta	ATP6V1E1	chr22	17587136	17633749