JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR20D_chr13_57155632_57168653	0/0	t0006	1183	8	1	3	0	1	3	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0007	1185	8	0	1	5	0	2	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0008	1185	5	0	1	2	0	2	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0009	1184	3	0	2	0	1	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0010	1184	3	0	0	3	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0011	1182	2	0	0	0	1	1	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0012	1182	2	1	0	0	1	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0013	1183	2	1	1	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0014	1184	2	0	0	0	1	1	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0015	1182	2	0	0	2	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0016	1187	2	0	0	2	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0017	1185	1	0	1	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0018	1181	1	1	0	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0019	1182	1	1	0	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0020	1183	1	1	0	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0021	1183	1	1	0	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0022	1183	1	0	1	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0023	1183	1	1	0	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0024	1181	1	0	0	0	1	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0025	1181	1	0	1	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0026	1185	1	0	1	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0027	1185	1	0	1	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0028	1183	1	1	0	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0029	1185	1	0	0	1	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0030	1186	1	0	0	0	0	1	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0031	1184	1	0	0	1	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0032	1184	1	0	1	0	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0033	1185	1	0	0	1	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20D_chr13_57155632_57168653	0/0	t0034	1188	1	0	0	1	0	0	copy fasta	PRR20D	chr13	57155632	57168653
PRR20E_chr13_57162197_57175218	0/0	t0001	1184	49	6	12	20	2	9	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0002	1183	37	14	6	14	1	2	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0003	1182	36	19	8	7	0	2	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0004	1185	25	3	5	14	0	3	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0005	1181	13	4	3	2	2	2	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0006	1185	11	0	3	6	1	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0007	1183	9	0	1	7	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0008	1180	7	0	2	2	0	3	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0009	1186	7	1	1	4	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0010	1184	6	1	1	0	1	3	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0011	1182	5	1	0	0	2	2	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0012	1181	4	3	1	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0013	1183	4	1	0	0	2	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0014	1186	4	0	0	4	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0015	1187	4	0	0	4	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0016	1185	3	0	0	3	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0017	1188	3	0	0	3	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0018	1183	2	1	0	0	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0019	1185	2	0	0	0	0	2	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0020	1184	2	0	0	1	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0021	1187	2	0	0	2	0	0	copy fasta	PRR20E	chr13	57162197	57175218