JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR20E_chr13_57162197_57175218	0/0	t0022	1181	1	1	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0023	1185	1	1	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0024	1182	1	0	1	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0025	1182	1	0	0	0	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0026	1181	1	0	0	0	0	1	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0027	1181	1	0	1	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0028	1182	1	1	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0029	1183	1	1	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0030	1183	1	0	0	0	1	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0031	1181	1	0	1	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0032	1182	1	0	1	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0033	1183	1	0	1	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0034	1184	1	0	1	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0035	1182	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0036	1183	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0037	1183	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0038	1185	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0039	1185	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0040	1187	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0041	1187	1	0	0	1	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0042	1185	1	0	1	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0043	1181	1	1	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20E_chr13_57162197_57175218	0/0	t0044	1182	1	1	0	0	0	0	copy fasta	PRR20E	chr13	57162197	57175218
PRR20G_chr3_127278783_127293046	0/1	t0001	455	102	0	18	74	0	9	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0002	453	97	30	27	24	10	6	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0003	453	92	36	7	39	0	10	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	1/0	t0004	453	80	0	15	45	3	16	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0005	452	39	15	14	0	5	5	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0006	453	6	0	0	6	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0007	453	5	0	0	5	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0008	453	3	3	0	0	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0009	452	3	0	3	0	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0010	453	1	1	0	0	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0011	453	1	0	0	1	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0012	455	1	0	0	1	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0013	455	1	0	0	1	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR20G_chr3_127278783_127293046	0/0	t0014	453	1	1	0	0	0	0	copy fasta	PRR20G	chr3	127278783	127293046
PRR22_chr19_5777960_5789746	1/1	t0001	105	370	85	71	154	18	40	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	t0002	105	11	11	0	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR22_chr19_5777960_5789746	0/0	t0003	105	1	0	1	0	0	0	copy fasta	PRR22	chr19	5777960	5789746
PRR23A_chr3_138998962_139011268	0/0	t0001	1507	313	70	66	137	13	27	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	1/1	t0002	1507	59	13	10	22	3	9	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	t0003	1507	4	1	2	0	0	1	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	t0004	1507	2	0	2	0	0	0	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	t0005	1507	1	0	0	0	0	1	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	t0006	1507	1	0	0	1	0	0	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	t0007	1507	1	0	0	1	0	0	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	t0008	1507	1	0	1	0	0	0	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	t0009	1507	1	0	1	0	0	0	copy fasta	PRR23A	chr3	138998962	139011268
PRR23A_chr3_138998962_139011268	0/0	t0010	1507	1	0	0	1	0	0	copy fasta	PRR23A	chr3	138998962	139011268