JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR23B_chr3_139014031_139025926	0/0	t0001	1099	358	82	69	164	13	30	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	1/1	t0002	1099	53	8	9	21	3	10	copy fasta	PRR23B	chr3	139014031	139025926
PRR23B_chr3_139014031_139025926	0/0	t0003	1099	1	0	0	1	0	0	copy fasta	PRR23B	chr3	139014031	139025926
PRR23C_chr3_139037102_139049892	0/1	t0001	2000	317	68	51	151	12	34	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0002	2002	44	1	1	40	0	2	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0003	2002	23	3	16	3	0	1	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0004	1998	15	11	4	0	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0005	2000	5	0	3	0	2	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0006	2002	5	2	3	0	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0007	2000	3	0	0	3	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0008	2000	3	3	0	0	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0009	2000	3	2	1	0	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0010	2000	2	0	0	2	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0011	2002	1	0	1	0	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0012	2000	1	0	0	0	0	1	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0013	2002	1	0	0	1	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0014	2000	1	0	0	1	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	0/0	t0015	2000	1	0	0	1	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23C_chr3_139037102_139049892	1/0	t0016	2003	1	0	0	0	0	0	copy fasta	PRR23C	chr3	139037102	139049892
PRR23D1_chr8_7534627_7547450	0/0	t0001	749	53	5	11	26	5	6	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0002	749	37	1	9	14	4	9	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0003	748	31	0	4	22	2	3	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0004	748	15	0	2	13	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0005	749	7	3	1	3	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0006	749	7	1	3	3	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0007	749	2	2	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0008	744	2	0	0	2	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0009	748	2	2	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0010	749	2	2	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0011	749	1	1	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0012	749	1	1	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0013	749	1	1	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0014	749	1	1	0	0	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0015	749	1	0	0	1	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0016	749	1	0	0	1	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0017	749	1	0	0	1	0	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D1_chr8_7534627_7547450	0/0	t0018	748	1	0	0	0	1	0	copy fasta	PRR23D1	chr8	7534627	7547450
PRR23D2_chr8_7773591_7786413	0/0	t0001	748	73	14	13	34	4	8	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0002	748	15	5	2	3	0	5	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0003	748	14	2	3	5	1	3	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0004	747	3	0	1	2	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0005	747	3	3	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0006	748	2	0	1	0	1	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0007	748	2	2	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0008	748	2	2	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0009	747	2	0	0	2	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0010	748	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0011	747	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0012	748	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0013	748	1	1	0	0	0	0	copy fasta	PRR23D2	chr8	7773591	7786413