JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR23D2_chr8_7773591_7786413	0/0	t0014	748	1	0	0	1	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23D2_chr8_7773591_7786413	0/0	t0015	748	1	0	0	1	0	0	copy fasta	PRR23D2	chr8	7773591	7786413
PRR23E_chr3_127188131_127203185	0/1	t0001	1015	409	75	80	198	14	41	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0002	1015	21	1	3	14	1	2	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0003	1012	12	10	2	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0004	1015	3	3	0	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0005	1015	2	0	1	0	1	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0006	1015	2	2	0	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0007	1015	1	1	0	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0008	1015	1	1	0	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0009	1015	1	0	0	0	0	1	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0010	1015	1	1	0	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0011	1015	1	0	0	1	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	1/0	t0012	1012	1	0	0	0	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR23E_chr3_127188131_127203185	0/0	t0013	1015	1	0	0	1	0	0	copy fasta	PRR23E	chr3	127188131	127203185
PRR27_chr4_70149237_70171609	0/0	t0001	4088	122	13	17	89	0	3	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0002	4088	86	2	13	57	3	11	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/1	t0003	4085	32	1	6	12	4	8	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	1/0	t0004	4088	17	15	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0005	4088	11	9	2	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0006	4088	9	2	0	7	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0007	4089	9	1	2	6	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0008	4084	7	0	2	0	2	3	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0009	4089	7	0	3	0	2	2	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0010	4087	6	4	0	0	0	2	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0011	4089	6	1	3	1	1	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0012	4085	5	0	0	5	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0013	4089	5	0	0	4	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0014	4087	5	1	2	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0015	4088	5	0	0	5	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0016	4085	4	0	0	4	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0017	4086	4	0	0	4	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0018	4088	4	4	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0019	4088	4	4	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0020	4088	4	0	3	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0021	4087	4	0	2	1	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0022	4087	3	3	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0023	4085	3	0	0	2	1	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0024	4087	3	3	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0025	4087	3	3	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0026	4087	3	3	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0027	4088	3	3	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0028	4090	3	0	2	0	1	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0029	4088	3	3	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0030	4085	2	0	0	0	0	2	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0031	4088	2	2	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0032	4088	2	2	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0033	4087	2	0	1	0	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0034	4087	2	2	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0035	4088	2	0	0	0	0	2	copy fasta	PRR27	chr4	70149237	70171609