JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR27_chr4_70149237_70171609	0/0	t0036	4087	2	0	0	2	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0037	4088	2	0	0	0	0	2	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0038	4088	2	2	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0039	4089	2	0	0	1	1	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0040	4089	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0041	4087	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0042	4087	1	0	0	0	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0043	4089	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0044	4084	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0045	4086	1	0	0	0	1	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0046	4086	1	0	0	0	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0047	4085	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0048	4086	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0049	4086	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0050	4086	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0051	4086	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0052	4087	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0053	4087	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0054	4088	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0055	4088	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0056	4088	1	0	0	0	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0057	4087	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0058	4087	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0059	4088	1	0	0	0	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0060	4088	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0061	4088	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0062	4088	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0063	4088	1	0	0	0	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0064	4088	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0065	4089	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0066	4089	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0067	4089	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0068	4089	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0069	4089	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0070	4090	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0071	4088	1	0	0	0	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0072	4088	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0073	4088	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0074	4088	1	0	0	0	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0075	4088	1	1	0	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0076	4088	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0077	4088	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0078	4089	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0079	4089	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0080	4090	1	0	0	0	0	1	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0081	4089	1	0	1	0	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0082	4089	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR27_chr4_70149237_70171609	0/0	t0083	4088	1	0	0	1	0	0	copy fasta	PRR27	chr4	70149237	70171609
PRR29_chr17_63993351_64009305	0/0	t0001	2559	116	25	25	41	6	19	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0002	2559	102	15	17	57	2	11	copy fasta	PRR29	chr17	63993351	64009305