JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR29_chr17_63993351_64009305	0/1	t0003	2559	89	5	29	35	10	9	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	1/0	t0004	2559	23	20	2	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0005	2559	22	0	0	21	0	1	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0006	2559	9	7	2	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0007	2559	6	6	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0008	2557	4	2	1	0	0	1	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0009	2559	4	0	1	2	0	1	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0010	2559	3	0	0	3	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0011	2559	3	2	1	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0012	2559	2	0	0	2	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0013	2557	2	2	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0014	2559	2	2	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0015	2559	2	0	0	2	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0016	2559	2	2	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0017	2559	2	2	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0018	2559	1	1	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0019	2559	1	1	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0020	2559	1	0	0	0	0	1	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0021	2559	1	0	0	1	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0022	2559	1	0	0	0	0	1	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0023	2559	1	1	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0024	2559	1	0	0	1	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0025	2559	1	1	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0026	2559	1	0	0	1	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0027	2559	1	1	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0028	2559	1	1	0	0	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0029	2559	1	0	0	1	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR29_chr17_63993351_64009305	0/0	t0030	2559	1	0	0	1	0	0	copy fasta	PRR29	chr17	63993351	64009305
PRR30_chr2_27131848_27144410	0/1	t0001	770	152	20	26	78	7	20	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	t0002	770	112	48	22	35	2	5	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	1/0	t0003	770	71	11	19	30	6	4	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	t0004	770	26	0	0	26	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	t0005	770	16	5	5	0	3	3	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	t0006	769	8	6	2	0	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR30_chr2_27131848_27144410	0/0	t0007	770	1	0	0	1	0	0	copy fasta	PRR30	chr2	27131848	27144410
PRR32_chrX_126814729_126826786	0/1	t0001	367	235	49	27	130	9	19	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	1/0	t0002	367	68	21	18	18	1	9	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	t0003	367	22	6	14	0	1	1	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	t0004	367	5	1	1	0	0	3	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	t0005	318	2	2	0	0	0	0	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	t0006	367	1	0	0	1	0	0	copy fasta	PRR32	chrX	126814729	126826786
PRR32_chrX_126814729_126826786	0/0	t0007	318	1	1	0	0	0	0	copy fasta	PRR32	chrX	126814729	126826786
PRR33_chr11_1883078_1896895	0/0	t0001	2379	151	5	35	89	5	17	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/1	t0002	2379	69	38	19	3	3	5	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0003	2379	23	0	2	14	1	6	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0004	2376	12	9	3	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	1/0	t0005	2379	11	3	6	0	1	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0006	2379	11	1	0	10	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0007	2379	6	4	0	0	0	2	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0008	2379	4	4	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895