JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR33_chr11_1883078_1896895	0/0	t0009	2379	3	2	1	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0010	2379	3	2	1	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0011	2379	2	0	2	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0012	2379	2	2	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0013	2379	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0014	2379	1	0	1	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0015	2379	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0016	2379	1	0	0	1	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0017	2379	1	0	0	0	0	1	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0018	2379	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0019	2379	1	0	0	0	0	1	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0020	2379	1	0	0	0	0	1	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0021	2379	1	0	0	1	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0022	2379	1	1	0	0	0	0	copy fasta	PRR33	chr11	1883078	1896895
PRR33_chr11_1883078_1896895	0/0	t0023	2379	1	0	0	0	0	1	copy fasta	PRR33	chr11	1883078	1896895
PRR35_chr16_555394_570529	0/0	t0001	530	192	5	36	108	7	36	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	1/1	t0002	530	148	50	36	47	7	6	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0003	516	29	6	2	20	0	1	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0004	530	10	7	2	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0005	516	9	4	1	4	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0006	530	9	7	0	2	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0007	530	8	8	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0008	530	4	4	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0009	516	3	2	1	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0010	530	3	0	0	3	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0011	530	2	2	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0012	530	2	0	2	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0013	530	1	0	0	0	0	1	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0014	516	1	0	0	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0015	530	1	1	0	0	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0016	530	1	0	0	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR35_chr16_555394_570529	0/0	t0017	530	1	0	0	1	0	0	copy fasta	PRR35	chr16	555394	570529
PRR36_chr19_7863719_7879390	1/1	t0001	427	282	77	55	103	14	31	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	t0002	427	71	0	15	38	2	16	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	t0003	427	28	17	8	0	0	3	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	t0004	427	2	2	0	0	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	t0005	427	2	0	0	2	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR36_chr19_7863719_7879390	0/0	t0006	427	1	0	0	1	0	0	copy fasta	PRR36	chr19	7863719	7879390
PRR3_chr6_30552295_30568723	0/1	t0001	1279	256	59	38	115	10	33	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0002	1279	98	13	29	45	6	5	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0003	1280	30	4	4	19	0	3	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0004	1279	16	7	0	6	0	3	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0005	1278	11	0	0	11	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0006	1278	9	6	2	1	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0007	1279	2	0	2	0	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0008	1280	2	0	0	2	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0009	1279	1	1	0	0	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0010	1279	1	0	1	0	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0011	1279	1	1	0	0	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0012	1279	1	0	0	1	0	0	copy fasta	PRR3	chr6	30552295	30568723