JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR3_chr6_30552295_30568723	0/0	t0013	1279	1	1	0	0	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0014	1278	1	0	0	1	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR3_chr6_30552295_30568723	0/0	t0015	1280	1	0	0	1	0	0	copy fasta	PRR3	chr6	30552295	30568723
PRR4_chr12_10840849_10854475	0/1	t0001	159	340	91	74	116	14	44	copy fasta	PRR4	chr12	10840849	10854475
PRR4_chr12_10840849_10854475	0/0	t0002	159	1	1	0	0	0	0	copy fasta	PRR4	chr12	10840849	10854475
PRR5L_chr11_36291288_36470204	0/1	t0001	2745	144	23	29	70	6	15	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0002	2744	51	9	20	15	3	4	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0003	2744	25	12	4	5	1	3	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0004	2746	9	9	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0005	2744	6	6	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0006	2745	4	3	1	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0007	2744	4	1	0	3	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0008	2744	3	0	3	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0009	2745	3	2	0	1	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0010	2745	3	3	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0011	2745	3	0	0	3	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0012	2749	2	2	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0013	2745	2	1	1	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0014	2744	2	0	0	0	0	2	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0015	2745	2	2	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0016	2745	1	0	0	0	0	1	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0017	2745	1	0	0	0	0	1	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	1/0	t0018	2745	1	0	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0019	2745	1	1	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0020	2745	1	0	0	1	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0021	2744	1	1	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0022	2744	1	1	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0023	2745	1	1	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5L_chr11_36291288_36470204	0/0	t0024	2745	1	1	0	0	0	0	copy fasta	PRR5L	chr11	36291288	36470204
PRR5_chr22_44697204_44742681	1/1	t0001	706	200	10	48	91	12	37	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0002	706	50	3	1	43	0	3	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0003	706	46	13	5	28	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0004	706	40	7	13	16	0	4	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0005	706	32	11	5	15	1	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0006	706	13	7	3	1	0	2	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0007	706	7	6	1	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0008	706	7	7	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0009	706	5	5	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0010	706	4	4	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0011	706	3	1	0	1	0	1	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0012	706	3	3	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0013	706	3	0	0	3	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0014	706	3	3	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0015	706	3	3	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0016	706	2	1	0	0	1	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0017	706	2	2	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0018	706	2	2	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0019	706	2	2	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0020	706	2	0	0	2	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0021	706	1	0	0	0	0	1	copy fasta	PRR5	chr22	44697204	44742681