JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRR5_chr22_44697204_44742681	0/0	t0022	706	1	0	1	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0023	706	1	1	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0024	690	1	1	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0025	690	1	1	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0026	690	1	1	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0027	706	1	1	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0028	706	1	0	1	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0029	706	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0030	706	1	0	0	0	0	1	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0031	706	1	0	0	1	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0032	706	1	0	0	0	0	1	copy fasta	PRR5	chr22	44697204	44742681
PRR5_chr22_44697204_44742681	0/0	t0033	706	1	1	0	0	0	0	copy fasta	PRR5	chr22	44697204	44742681
PRR7_chr5_177441814_177461286	1/1	t0001	637	308	86	75	94	12	39	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	t0002	638	13	2	3	4	0	4	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	t0003	637	3	3	0	0	0	0	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	t0004	637	2	2	0	0	0	0	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	t0005	637	1	0	0	1	0	0	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	t0006	638	1	1	0	0	0	0	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	t0007	637	1	1	0	0	0	0	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	t0008	637	1	1	0	0	0	0	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	t0009	637	1	0	0	1	0	0	copy fasta	PRR7	chr5	177441814	177461286
PRR7_chr5_177441814_177461286	0/0	t0010	638	1	0	0	0	0	1	copy fasta	PRR7	chr5	177441814	177461286
PRR9_chr1_153212584_153224310	1/1	t0001	872	375	68	65	184	15	41	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	t0002	872	50	20	10	17	1	2	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	t0003	872	2	2	0	0	0	0	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	t0004	872	1	1	0	0	0	0	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	t0005	872	1	0	1	0	0	0	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	t0006	872	1	0	0	0	0	1	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	t0007	872	1	1	0	0	0	0	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	t0008	872	1	1	0	0	0	0	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	t0009	872	1	1	0	0	0	0	copy fasta	PRR9	chr1	153212584	153224310
PRR9_chr1_153212584_153224310	0/0	t0010	872	1	0	0	1	0	0	copy fasta	PRR9	chr1	153212584	153224310
PRRC1_chr5_127512640_127560085	0/1	t0001	3325	114	19	17	64	3	10	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	1/0	t0002	3327	110	20	25	45	6	13	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0003	3327	31	11	7	8	1	4	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0004	3330	15	12	3	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0005	3322	10	0	0	10	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0006	3327	10	8	0	1	1	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0007	3325	6	0	6	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0008	3326	5	5	0	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0009	3327	5	0	0	5	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0010	3328	4	0	0	4	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0011	3325	4	3	1	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0012	3326	3	3	0	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0013	3311	3	1	2	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0014	3327	2	0	0	2	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0015	3327	2	0	0	0	1	1	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0016	3327	1	0	0	0	0	1	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0017	3327	1	1	0	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0018	3327	1	0	1	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085