JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRRC1_chr5_127512640_127560085	0/0	t0019	3327	1	0	1	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0020	3327	1	1	0	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0021	3327	1	1	0	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0022	3326	1	0	1	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0023	3327	1	1	0	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0024	3325	1	1	0	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0025	3325	1	0	0	1	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0026	3325	1	0	0	1	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0027	3325	1	0	0	1	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0028	3325	1	0	1	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0029	3325	1	0	0	0	0	1	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0030	3311	1	0	1	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC1_chr5_127512640_127560085	0/0	t0031	3325	1	1	0	0	0	0	copy fasta	PRRC1	chr5	127512640	127560085
PRRC2A_chr6_31615715_31642771	0/1	t0001	430	269	44	51	130	14	29	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	t0002	430	154	47	31	58	4	14	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	t0003	430	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	t0004	430	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	t0005	430	1	0	0	0	0	1	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2A_chr6_31615715_31642771	0/0	t0006	430	1	1	0	0	0	0	copy fasta	PRRC2A	chr6	31615715	31642771
PRRC2B_chr9_131389086_131505193	0/1	t0001	4549	96	21	21	33	8	12	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0002	4549	16	10	4	2	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0003	4550	16	1	2	9	3	1	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0004	4550	9	8	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0005	4550	8	0	4	0	2	2	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0006	4551	7	0	4	0	3	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0007	4551	6	5	0	0	0	1	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0008	4550	4	3	0	0	0	1	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0009	4550	3	2	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0010	4549	3	3	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0011	4550	3	0	0	3	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0012	4551	2	0	1	1	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0013	4550	2	2	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0014	4549	2	2	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	1/0	t0015	4549	2	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0016	4549	2	0	2	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0017	4549	2	0	2	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0018	4550	2	1	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0019	4550	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0020	4550	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0021	4549	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0022	4549	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0023	4550	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0024	4550	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0025	4550	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0026	4549	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0027	4549	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0028	4549	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0029	4549	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0030	4551	1	0	0	0	1	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0031	4551	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193