JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRRC2B_chr9_131389086_131505193	0/0	t0032	4551	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0033	4551	1	0	0	0	0	1	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0034	4550	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0035	4550	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0036	4550	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0037	4550	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0038	4550	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0039	4549	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0040	4549	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0041	4549	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0042	4549	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0043	4549	1	0	0	1	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0044	4549	1	0	0	1	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0045	4549	1	0	0	0	1	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0046	4550	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0047	4549	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0048	4549	1	1	0	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2B_chr9_131389086_131505193	0/0	t0049	4549	1	0	1	0	0	0	copy fasta	PRRC2B	chr9	131389086	131505193
PRRC2C_chr1_171480530_171598511	0/0	t0001	1928	166	40	34	71	9	12	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	1/1	t0002	1928	61	19	18	13	3	6	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0003	1928	59	7	10	32	0	10	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0004	1928	32	3	9	8	4	8	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0005	1930	3	0	0	3	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0006	1928	3	2	1	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0007	1928	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0008	1939	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0009	1928	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0010	1928	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0011	1928	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0012	1928	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0013	1928	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0014	1928	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0015	1928	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0016	1928	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0017	1928	1	1	0	0	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRC2C_chr1_171480530_171598511	0/0	t0018	1928	1	0	0	1	0	0	copy fasta	PRRC2C	chr1	171480530	171598511
PRRG1_chrX_37344364_37462291	1/1	t0001	3744	136	22	22	66	7	17	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0002	3744	39	18	3	9	0	9	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0003	3744	15	12	3	0	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0004	3744	9	9	0	0	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0005	3744	5	5	0	0	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0006	3744	4	4	0	0	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0007	3744	2	2	0	0	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0008	3744	1	0	0	1	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0009	3744	1	0	0	1	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0010	3745	1	0	0	1	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0011	3744	1	0	0	1	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0012	3745	1	0	0	1	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG1_chrX_37344364_37462291	0/0	t0013	3744	1	0	1	0	0	0	copy fasta	PRRG1	chrX	37344364	37462291
PRRG2_chr19_49576316_49596004	1/0	t0001	795	183	26	40	84	10	22	copy fasta	PRRG2	chr19	49576316	49596004