JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRRG2_chr19_49576316_49596004	0/1	t0002	795	134	55	22	40	4	12	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	t0003	795	18	7	5	0	0	6	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	t0004	796	8	8	0	0	0	0	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	t0005	795	1	0	1	0	0	0	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	t0006	795	1	1	0	0	0	0	copy fasta	PRRG2	chr19	49576316	49596004
PRRG2_chr19_49576316_49596004	0/0	t0007	795	1	1	0	0	0	0	copy fasta	PRRG2	chr19	49576316	49596004
PRRG3_chrX_151690458_151710924	0/0	t0001	4967	29	0	7	22	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0002	4983	17	1	2	13	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0003	4993	13	0	13	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0004	4962	11	11	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0005	4984	10	1	0	9	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0006	4983	7	0	3	3	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0007	4968	6	0	2	4	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0008	4982	6	0	0	2	0	4	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0009	4984	6	0	2	4	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0010	5003	5	0	0	5	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0011	4983	5	0	3	0	1	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0012	4967	4	0	0	2	2	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0013	4983	3	0	0	3	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0014	4984	3	0	0	3	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0015	4983	3	0	0	3	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0016	4986	3	0	0	2	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0017	4987	3	0	0	2	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0018	4991	2	2	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0019	4967	2	1	1	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0020	4969	2	2	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0021	4967	2	0	2	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0022	4985	2	2	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0023	4975	2	2	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0024	4993	2	2	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0025	5001	2	0	2	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0026	5009	2	0	0	0	0	2	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0027	5004	2	0	0	2	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0028	5005	2	0	0	1	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0029	4993	2	2	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0030	4995	2	2	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0031	5005	2	2	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0032	5008	2	2	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0033	4983	2	0	0	1	1	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0034	4984	2	0	0	0	0	2	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0035	4979	2	0	0	1	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0036	4982	2	0	0	0	0	2	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0037	4985	2	0	0	1	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0038	4969	2	0	2	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0039	5005	2	0	0	2	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0040	4994	2	0	2	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0041	4985	2	0	0	0	2	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0042	4989	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0043	5012	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0044	4977	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924