JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRRG3_chrX_151690458_151710924	0/0	t0045	5004	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0046	4983	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0047	4970	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0048	4967	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0049	4967	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0050	4968	1	0	0	0	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0051	4969	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0052	4970	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0053	4965	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0054	4971	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0055	4966	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0056	4967	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0057	4969	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0058	4969	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0059	4969	1	0	0	0	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0060	4969	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0061	4982	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0062	4986	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0063	4973	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0064	4996	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0065	4975	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0066	4994	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0067	4995	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0068	4993	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0069	4981	1	0	0	0	1	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0070	4991	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0071	4998	1	0	1	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0072	5001	1	0	0	0	1	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0073	5000	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0074	4995	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0075	5008	1	0	0	0	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0076	5006	1	0	0	0	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0077	5011	1	0	0	0	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0078	5007	1	0	0	0	0	1	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0079	5002	1	1	0	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0080	4984	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0081	4991	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0082	4997	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0083	4988	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0084	4989	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0085	5001	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0086	4990	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0087	5001	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0088	5004	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0089	5003	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0090	5008	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0091	5006	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0092	5007	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0093	5009	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG3_chrX_151690458_151710924	0/0	t0094	4978	1	0	0	1	0	0	copy fasta	PRRG3	chrX	151690458	151710924