JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRRG3_chrX_151690458_151710924	0/0	t0195	4984	1	0	1	0	0	0	copy fasta	PRRG3	chrX	151690458	151710924
PRRG4_chr11_32824927_32863120	0/1	t0001	4862	136	22	35	59	2	17	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0002	4862	83	12	13	49	3	6	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0003	4861	27	5	9	7	1	5	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	1/0	t0004	4863	20	1	8	4	3	3	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0005	4858	16	7	3	0	3	3	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0006	4863	15	0	0	15	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0007	4863	14	2	2	7	0	3	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0008	4862	11	10	1	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0009	4861	8	8	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0010	4862	7	0	0	7	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0011	4862	7	1	2	0	1	3	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0012	4861	5	5	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0013	4862	3	3	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0014	4861	3	3	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0015	4861	3	3	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0016	4862	3	2	1	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0017	4861	3	0	1	2	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0018	4862	2	0	0	2	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0019	4863	2	1	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0020	4858	2	2	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0021	4850	2	2	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0022	4862	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0023	4860	1	0	1	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0024	4863	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0025	4862	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0026	4861	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0027	4861	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0028	4862	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0029	4863	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0030	4862	1	0	1	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0031	4861	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0032	4861	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0033	4864	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0034	4862	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0035	4864	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0036	4861	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0037	4862	1	0	0	0	0	1	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0038	4862	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0039	4862	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0040	4862	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0041	4861	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0042	4863	1	0	1	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0043	4859	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0044	4862	1	0	0	0	0	1	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0045	4862	1	0	0	0	1	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0046	4863	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0047	4862	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0048	4850	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0049	4850	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120