JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRRG4_chr11_32824927_32863120	0/0	t0050	4863	1	1	0	0	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRG4_chr11_32824927_32863120	0/0	t0051	4860	1	0	0	1	0	0	copy fasta	PRRG4	chr11	32824927	32863120
PRRT1B_chr9_131540523_131564815	0/0	t0001	1708	101	1	23	67	3	7	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0002	1708	98	27	8	50	1	12	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/1	t0003	1708	41	8	17	7	3	5	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0004	1708	30	4	5	10	5	6	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0005	1708	28	3	6	14	1	4	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0006	1707	21	1	10	0	5	5	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0007	1708	20	3	0	17	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0008	1708	11	0	0	11	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0009	1708	9	3	1	2	0	3	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0010	1708	8	0	0	8	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0011	1708	6	5	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0012	1707	6	0	0	6	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0013	1707	6	0	0	6	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0014	1708	4	4	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0015	1708	4	3	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0016	1708	4	4	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0017	1708	4	0	0	2	0	2	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0018	1708	4	2	2	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0019	1707	3	0	0	2	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0020	1708	3	2	0	0	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0021	1707	3	0	0	3	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0022	1708	2	1	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0023	1708	2	1	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0024	1708	2	2	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0025	1708	2	1	0	0	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0026	1707	2	0	0	2	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0027	1708	2	2	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0028	1708	2	2	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0029	1708	2	2	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0030	1708	2	2	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0031	1708	2	1	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0032	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0033	1708	1	0	1	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0034	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0035	1708	1	0	0	1	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0036	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0037	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0038	1708	1	0	0	1	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0039	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0040	1708	1	0	0	0	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0041	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0042	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0043	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0044	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0045	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0046	1707	1	0	0	1	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0047	1708	1	0	0	1	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0048	1708	1	0	0	1	0	0	copy fasta	PRRT1B	chr9	131540523	131564815