JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRRT1B_chr9_131540523_131564815	0/0	t0049	1708	1	0	0	0	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0050	1707	1	0	0	0	0	1	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	1/0	t0051	1707	1	0	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0052	1708	1	0	0	1	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0053	1708	1	0	0	1	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0054	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1B_chr9_131540523_131564815	0/0	t0055	1708	1	1	0	0	0	0	copy fasta	PRRT1B	chr9	131540523	131564815
PRRT1_chr6_32143363_32156939	0/1	t0001	972	414	89	80	182	18	44	copy fasta	PRRT1	chr6	32143363	32156939
PRRT1_chr6_32143363_32156939	0/0	t0002	972	3	3	0	0	0	0	copy fasta	PRRT1	chr6	32143363	32156939
PRRT1_chr6_32143363_32156939	0/0	t0003	972	2	2	0	0	0	0	copy fasta	PRRT1	chr6	32143363	32156939
PRRT1_chr6_32143363_32156939	0/0	t0004	972	2	0	2	0	0	0	copy fasta	PRRT1	chr6	32143363	32156939
PRRT2_chr16_29807193_29820881	0/0	t0001	1439	163	24	37	76	9	17	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0002	1440	50	8	5	34	0	3	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0003	1436	19	11	1	4	1	2	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0004	1438	13	2	3	8	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0005	1438	9	0	0	9	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/1	t0006	1437	7	0	4	1	1	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0007	1441	6	6	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0008	1435	6	4	0	2	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0009	1438	5	5	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0010	1437	5	3	1	1	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0011	1438	4	0	0	2	2	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	1/0	t0012	1440	4	3	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0013	1439	3	0	0	0	0	3	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0014	1439	3	3	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0015	1441	2	0	0	2	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0016	1440	2	2	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0017	1437	2	0	0	1	1	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0018	1439	1	0	0	0	1	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0019	1439	1	0	0	1	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0020	1439	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0021	1439	1	0	0	1	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0022	1439	1	0	0	0	0	1	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0023	1439	1	0	0	1	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0024	1440	1	0	1	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0025	1423	1	0	0	0	1	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0026	1465	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0027	1450	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0028	1442	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0029	1441	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0030	1439	1	0	0	1	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0031	1439	1	0	0	1	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0032	1438	1	0	0	1	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0033	1440	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0034	1439	1	1	0	0	0	0	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0035	1434	1	0	0	0	0	1	copy fasta	PRRT2	chr16	29807193	29820881
PRRT2_chr16_29807193_29820881	0/0	t0036	1436	1	0	0	0	0	1	copy fasta	PRRT2	chr16	29807193	29820881
PRRT3_chr3_9940542_9957408	0/1	t0001	828	147	9	32	76	11	18	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0002	829	139	36	28	62	1	12	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	1/0	t0003	830	42	23	9	7	0	2	copy fasta	PRRT3	chr3	9940542	9957408