JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRRT3_chr3_9940542_9957408	0/0	t0004	824	9	1	2	5	0	1	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0005	829	7	6	1	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0006	830	5	5	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0007	828	4	3	1	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0008	824	3	3	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0009	831	3	3	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0010	829	3	0	0	0	0	3	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0011	829	2	0	0	2	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0012	818	2	2	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0013	829	2	0	2	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0014	830	2	1	0	0	0	1	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0015	830	1	0	0	0	0	1	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0016	830	1	1	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0017	828	1	0	0	1	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0018	830	1	0	1	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0019	830	1	0	0	1	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0020	831	1	1	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0021	830	1	1	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT3_chr3_9940542_9957408	0/0	t0022	830	1	1	0	0	0	0	copy fasta	PRRT3	chr3	9940542	9957408
PRRT4_chr7_128345325_128366690	0/1	t0001	850	222	49	63	70	12	27	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0002	850	96	15	7	68	3	3	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	1/0	t0003	851	56	6	1	45	2	1	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0004	851	26	0	2	18	1	5	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0005	850	23	10	1	12	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0006	850	6	0	3	1	0	2	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0007	850	4	3	1	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0008	850	4	4	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0009	850	4	3	1	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0010	851	2	0	2	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0011	850	2	0	1	0	0	1	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0012	851	1	1	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0013	850	1	0	0	0	0	1	copy fasta	PRRT4	chr7	128345325	128366690
PRRT4_chr7_128345325_128366690	0/0	t0014	850	1	1	0	0	0	0	copy fasta	PRRT4	chr7	128345325	128366690
PRRX1_chr1_170659131_170744421	0/0	t0001	3314	81	0	18	53	0	10	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0002	3319	69	2	19	37	3	8	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/1	t0003	3318	62	16	7	27	3	8	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	1/0	t0004	3324	57	2	13	32	3	6	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0005	3324	14	8	5	0	0	1	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0006	3322	12	11	0	1	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0007	3319	9	9	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0008	3326	6	4	1	1	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0009	3320	6	6	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0010	3321	3	3	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0011	3314	3	0	2	1	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0012	3324	3	3	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0013	3325	2	2	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0014	3318	2	2	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0015	3319	2	0	0	2	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0016	3319	2	2	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0017	3328	2	2	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421