JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRRX1_chr1_170659131_170744421	0/0	t0018	3324	2	1	1	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0019	3319	2	2	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0020	3328	1	0	1	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0021	3324	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0022	3324	1	0	0	0	1	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0023	3322	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0024	3320	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0025	3321	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0026	3318	1	0	0	1	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0027	3318	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0028	3318	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0029	3318	1	0	0	0	0	1	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0030	3319	1	0	1	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0031	3314	1	0	0	1	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0032	3314	1	0	0	1	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0033	3326	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0034	3314	1	0	0	1	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0035	3321	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX1_chr1_170659131_170744421	0/0	t0036	3319	1	1	0	0	0	0	copy fasta	PRRX1	chr1	170659131	170744421
PRRX2_chr9_129660647_129727674	1/1	t0001	544	234	40	50	95	17	30	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0002	544	51	17	5	20	0	9	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0003	544	18	3	1	14	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0004	544	8	5	2	0	0	1	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0005	544	8	8	0	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0006	544	8	0	5	2	0	1	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0007	544	7	0	0	7	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0008	544	4	2	2	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0009	544	3	2	1	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0010	544	3	3	0	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0011	544	2	2	0	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0012	544	2	1	0	1	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0013	544	1	1	0	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0014	544	1	0	0	1	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0015	544	1	1	0	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0016	544	1	0	0	0	0	1	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0017	544	1	0	0	0	1	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0018	544	1	1	0	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0019	544	1	1	0	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0020	544	1	1	0	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0021	544	1	1	0	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRRX2_chr9_129660647_129727674	0/0	t0022	544	1	1	0	0	0	0	copy fasta	PRRX2	chr9	129660647	129727674
PRSS12_chr4_118275038_118358003	1/1	t0001	2182	232	62	31	122	5	10	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0002	2180	60	2	19	23	3	13	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0003	2182	38	2	6	17	2	11	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0004	2182	4	4	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0005	2180	3	3	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0006	2182	3	0	0	3	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0007	2182	3	0	1	0	0	2	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0008	2180	3	0	2	0	0	1	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0009	2182	2	2	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003