Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP6V1FNB_chr7_128861330_128877047	0/0	t0035	3355	1	0	1	0	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	t0036	3355	1	1	0	0	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	t0037	3355	1	1	0	0	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1FNB_chr7_128861330_128877047	0/0	t0038	3355	1	1	0	0	0	0	copy fasta	ATP6V1FNB	chr7	128861330	128877047
ATP6V1F_chr7_128857856_128870847	1/1	t0001	319	390	60	75	190	18	45	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1F_chr7_128857856_128870847	0/0	t0002	319	47	35	3	4	0	5	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1F_chr7_128857856_128870847	0/0	t0003	319	3	0	0	3	0	0	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1F_chr7_128857856_128870847	0/0	t0004	319	1	0	0	1	0	0	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1F_chr7_128857856_128870847	0/0	t0005	319	1	1	0	0	0	0	copy fasta	ATP6V1F	chr7	128857856	128870847
ATP6V1G1_chr9_114582769_114603879	0/0	t0001	1206	120	38	28	37	5	12	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0002	1207	117	11	7	86	0	13	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0003	1208	55	4	10	35	1	5	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0004	1207	40	20	12	0	4	4	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	1/1	t0005	1207	37	11	11	3	4	6	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0006	1205	32	2	4	25	0	1	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0007	1207	3	2	1	0	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0008	1207	3	3	0	0	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0009	1206	2	2	0	0	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0010	1207	2	2	0	0	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0011	1208	1	0	0	1	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0012	1208	1	0	0	0	0	1	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0013	1208	1	0	0	1	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0014	1208	1	0	0	1	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0015	1207	1	0	0	1	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0016	1207	1	0	0	0	1	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0017	1208	1	1	0	0	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0018	1207	1	0	0	0	1	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G1_chr9_114582769_114603879	0/0	t0019	1206	1	0	1	0	0	0	copy fasta	ATP6V1G1	chr9	114582769	114603879
ATP6V1G2_chr6_31539444_31551608	0/1	t0001	1014	214	48	46	90	8	21	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	t0002	1014	158	39	30	74	4	11	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	t0003	1014	40	3	2	31	0	4	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	t0004	1014	10	1	4	1	3	1	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	t0005	1012	6	3	0	2	1	0	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	t0006	1008	5	0	0	0	0	5	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G2_chr6_31539444_31551608	0/0	t0007	1014	2	0	0	0	0	2	copy fasta	ATP6V1G2	chr6	31539444	31551608
ATP6V1G3_chr1_198518222_198545680	0/1	t0001	200	386	80	71	178	18	38	copy fasta	ATP6V1G3	chr1	198518222	198545680
ATP6V1G3_chr1_198518222_198545680	0/0	t0002	200	19	12	5	0	0	2	copy fasta	ATP6V1G3	chr1	198518222	198545680
ATP6V1H_chr8_53710543_53848245	1/1	t0001	669	176	53	32	66	8	15	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	t0002	669	101	21	9	63	0	8	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	t0003	669	4	1	3	0	0	0	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	t0004	679	2	2	0	0	0	0	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	t0005	669	1	0	0	1	0	0	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	t0006	669	1	1	0	0	0	0	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP6V1H_chr8_53710543_53848245	0/0	t0007	669	1	0	0	0	0	1	copy fasta	ATP6V1H	chr8	53710543	53848245
ATP7A_chrX_77905693_78055395	1/1	t0001	3990	61	3	8	32	5	11	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0002	3992	34	0	3	26	0	5	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0003	3992	30	15	10	0	2	3	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0004	3990	30	1	5	22	0	2	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0005	3990	24	12	1	8	0	3	copy fasta	ATP7A	chrX	77905693	78055395
ATP7A_chrX_77905693_78055395	0/0	t0006	3992	11	0	0	11	0	0	copy fasta	ATP7A	chrX	77905693	78055395