JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRSS12_chr4_118275038_118358003	0/0	t0010	2182	2	2	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0011	2182	1	0	0	0	0	1	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0012	2182	1	0	1	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0013	2182	1	0	0	0	0	1	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0014	2182	1	0	0	1	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0015	2182	1	0	0	1	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0016	2182	1	0	0	1	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0017	2182	1	1	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0018	2182	1	1	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0019	2182	1	0	0	1	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0020	2182	1	1	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0021	2182	1	1	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0022	2182	1	0	0	0	0	1	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0023	2182	1	0	0	1	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS12_chr4_118275038_118358003	0/0	t0024	2182	1	1	0	0	0	0	copy fasta	PRSS12	chr4	118275038	118358003
PRSS16_chr6_27242701_27261620	1/0	t0001	1343	273	39	69	121	8	35	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0002	1343	30	15	0	15	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0003	1343	24	16	1	1	3	3	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/1	t0004	1343	23	14	2	3	0	3	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0005	1343	8	8	0	0	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0006	1339	3	0	1	0	2	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0007	1343	2	1	1	0	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0008	1343	2	2	0	0	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0009	1343	1	0	0	0	1	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0010	1343	1	0	0	1	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0011	1343	1	1	0	0	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0012	1343	1	0	0	0	0	1	copy fasta	PRSS16	chr6	27242701	27261620
PRSS16_chr6_27242701_27261620	0/0	t0013	1343	1	0	0	1	0	0	copy fasta	PRSS16	chr6	27242701	27261620
PRSS1_chr7_142744472_142758072	0/1	t0001	66	365	96	68	150	12	38	copy fasta	PRSS1	chr7	142744472	142758072
PRSS21_chr16_2812237_2826719	1/1	t0001	147	430	100	78	194	16	40	copy fasta	PRSS21	chr16	2812237	2826719
PRSS22_chr16_2847730_2863170	0/0	t0001	425	192	53	24	91	4	20	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	t0002	431	104	15	18	60	4	7	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/1	t0003	425	84	21	33	22	4	3	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	t0004	425	14	0	9	0	4	1	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	t0005	425	11	11	0	0	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	1/0	t0006	430	2	0	0	1	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	t0007	431	1	0	0	0	0	1	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	t0008	430	1	0	0	1	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	t0009	425	1	0	0	1	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	t0010	431	1	0	0	1	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS22_chr16_2847730_2863170	0/0	t0011	425	1	0	0	1	0	0	copy fasta	PRSS22	chr16	2847730	2863170
PRSS23_chr11_86795542_86816233	1/1	t0001	2562	174	35	35	65	10	27	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0002	2562	108	16	8	75	2	7	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0003	2558	18	6	7	1	2	2	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0004	2564	8	2	4	1	1	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0005	2568	7	0	3	0	1	3	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0006	2558	6	6	0	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0007	2564	6	6	0	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0008	2566	5	1	1	0	0	3	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0009	2564	4	0	0	4	0	0	copy fasta	PRSS23	chr11	86795542	86816233