JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRSS23_chr11_86795542_86816233	0/0	t0010	2570	4	0	0	4	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0011	2562	3	3	0	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0012	2562	3	3	0	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0013	2562	1	0	0	1	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0014	2562	1	0	0	1	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0015	2562	1	0	0	1	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0016	2564	1	1	0	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0017	2566	1	1	0	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0018	2570	1	0	1	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0019	2574	1	0	1	0	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS23_chr11_86795542_86816233	0/0	t0020	2562	1	0	0	1	0	0	copy fasta	PRSS23	chr11	86795542	86816233
PRSS27_chr16_2707422_2725224	1/1	t0001	263	378	98	74	144	18	42	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	t0002	263	2	2	0	0	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	t0003	263	1	0	0	1	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS27_chr16_2707422_2725224	0/0	t0004	263	1	0	0	1	0	0	copy fasta	PRSS27	chr16	2707422	2725224
PRSS2_chr7_142765970_142779560	0/1	t0001	66	368	97	76	150	10	34	copy fasta	PRSS2	chr7	142765970	142779560
PRSS2_chr7_142765970_142779560	0/0	t0002	66	1	1	0	0	0	0	copy fasta	PRSS2	chr7	142765970	142779560
PRSS33_chr16_2778953_2792560	1/1	t0001	777	366	81	74	154	16	39	copy fasta	PRSS33	chr16	2778953	2792560
PRSS33_chr16_2778953_2792560	0/0	t0002	777	15	15	0	0	0	0	copy fasta	PRSS33	chr16	2778953	2792560
PRSS33_chr16_2778953_2792560	0/0	t0003	777	4	4	0	0	0	0	copy fasta	PRSS33	chr16	2778953	2792560
PRSS33_chr16_2778953_2792560	0/0	t0004	777	1	0	0	0	0	1	copy fasta	PRSS33	chr16	2778953	2792560
PRSS35_chr6_83507534_83530704	0/1	t0001	1203	417	89	81	196	10	40	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	1/0	t0002	1203	11	0	3	0	5	2	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	t0003	1203	3	3	0	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	t0004	1203	2	0	0	2	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	t0005	1203	2	0	0	0	0	2	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	t0006	1203	1	0	0	0	1	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	t0007	1203	1	1	0	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	t0008	1203	1	1	0	0	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	t0009	1203	1	0	0	1	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS35_chr6_83507534_83530704	0/0	t0010	1203	1	0	0	1	0	0	copy fasta	PRSS35	chr6	83507534	83530704
PRSS36_chr16_31133926_31155066	1/1	t0001	244	318	83	78	110	14	31	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	t0002	244	6	6	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	t0003	244	3	0	0	0	0	3	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	t0004	244	1	1	0	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	t0005	244	1	0	1	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS36_chr16_31133926_31155066	0/0	t0006	244	1	0	1	0	0	0	copy fasta	PRSS36	chr16	31133926	31155066
PRSS37_chr7_141831300_141846485	1/1	t0001	532	387	77	66	190	16	36	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	t0002	532	7	6	1	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	t0003	532	5	5	0	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	t0004	532	3	0	1	0	0	2	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	t0005	532	2	0	0	0	2	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	t0006	532	1	0	0	1	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	t0007	532	1	1	0	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	t0008	532	1	1	0	0	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS37_chr7_141831300_141846485	0/0	t0009	532	1	0	0	1	0	0	copy fasta	PRSS37	chr7	141831300	141846485
PRSS38_chr1_227810675_227851470	1/1	t0001	305	412	85	78	188	18	41	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	t0002	305	35	8	0	20	0	7	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	t0003	305	2	2	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470
PRSS38_chr1_227810675_227851470	0/0	t0004	305	1	1	0	0	0	0	copy fasta	PRSS38	chr1	227810675	227851470