JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRSS3_chr9_33790561_33804231	1/1	t0001	65	423	84	82	192	17	46	copy fasta	PRSS3	chr9	33790561	33804231
PRSS3_chr9_33790561_33804231	0/0	t0002	65	1	0	0	0	1	0	copy fasta	PRSS3	chr9	33790561	33804231
PRSS41_chr16_2793470_2810304	1/1	t0001	188	423	95	74	196	14	42	copy fasta	PRSS41	chr16	2793470	2810304
PRSS41_chr16_2793470_2810304	0/0	t0002	188	3	3	0	0	0	0	copy fasta	PRSS41	chr16	2793470	2810304
PRSS48_chr4_151272161_151296862	1/1	t0001	422	298	68	47	145	9	27	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/0	t0002	422	111	12	24	57	3	15	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/0	t0003	422	16	16	0	0	0	0	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/0	t0004	422	2	0	0	2	0	0	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/0	t0005	422	1	0	1	0	0	0	copy fasta	PRSS48	chr4	151272161	151296862
PRSS50_chr3_46707117_46722869	1/1	t0001	175	346	65	72	152	15	40	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	t0002	175	66	21	7	36	0	2	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	t0003	175	7	6	1	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	t0004	175	1	0	0	0	1	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS53_chr16_31078437_31093943	1/0	t0001	488	280	60	58	120	11	30	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/1	t0002	488	22	2	10	0	5	4	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	t0003	488	16	16	0	0	0	0	copy fasta	PRSS53	chr16	31078437	31093943
PRSS54_chr16_58274997_58300025	1/1	t0001	598	348	80	49	172	16	29	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	t0002	598	51	1	11	30	2	7	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	t0003	598	11	3	6	0	0	2	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	t0004	598	1	1	0	0	0	0	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	t0005	598	1	1	0	0	0	0	copy fasta	PRSS54	chr16	58274997	58300025
PRSS55_chr8_10520532_10543819	1/1	t0001	81	480	98	82	236	14	48	copy fasta	PRSS55	chr8	10520532	10543819
PRSS56_chr2_232515388_232530716	1/1	t0001	422	264	59	52	105	11	35	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	t0002	422	165	35	13	99	5	13	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	t0003	422	3	3	0	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	t0004	422	2	0	0	2	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	t0005	422	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	t0006	422	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	t0007	422	1	0	1	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	t0008	422	1	1	0	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	t0009	422	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	t0010	422	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS57_chr19_680546_700452	1/1	t0001	193	409	74	75	202	18	38	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	t0002	193	28	18	4	0	0	6	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	t0003	193	2	2	0	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	t0004	193	1	1	0	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	t0005	193	1	1	0	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	t0006	193	1	0	1	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS58_chr7_142247143_142263058	0/1	t0001	188	312	51	59	148	17	36	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	t0002	188	88	35	18	30	1	4	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	t0003	188	4	4	0	0	0	0	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	t0004	188	1	0	1	0	0	0	copy fasta	PRSS58	chr7	142247143	142263058
PRSS8_chr16_31126433_31140727	1/1	t0001	806	286	83	71	87	14	29	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	t0002	806	5	0	0	5	0	0	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	t0003	806	3	0	0	3	0	0	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	t0004	806	3	0	0	3	0	0	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	t0005	806	2	1	1	0	0	0	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	t0006	806	2	2	0	0	0	0	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	t0007	806	1	0	0	0	0	1	copy fasta	PRSS8	chr16	31126433	31140727
PRTFDC1_chr10_24843614_24957606	0/0	t0001	1262	95	14	13	42	5	21	copy fasta	PRTFDC1	chr10	24843614	24957606