JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRUNE1_chr1_151003449_151040713	0/0	t0003	1664	12	4	1	2	1	4	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0004	1664	3	3	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0005	1665	2	2	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0006	1664	2	2	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0007	1664	2	0	0	2	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0008	1664	2	0	0	0	0	2	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0009	1665	1	1	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0010	1664	1	1	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0011	1664	1	0	0	1	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0012	1664	1	1	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0013	1664	1	1	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	t0014	1664	1	0	0	0	0	1	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE2_chr9_76606376_76911114	1/1	t0001	3346	109	18	29	45	3	12	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0002	3348	25	11	0	11	0	3	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0003	3348	20	7	1	3	1	8	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0004	3346	17	6	8	0	0	3	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0005	3346	12	11	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0006	3348	5	5	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0007	3348	5	0	0	5	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0008	3348	4	4	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0009	3348	4	2	2	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0010	3346	4	0	3	0	1	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0011	3346	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0012	3346	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0013	3346	2	0	2	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0014	3346	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0015	3346	2	0	2	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0016	3346	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0017	3348	2	0	0	2	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0018	3346	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0019	3346	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0020	3346	2	0	1	0	1	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0021	3346	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0022	3346	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0023	3348	1	0	0	0	0	1	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0024	3348	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0025	3346	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0026	3346	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0027	3346	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0028	3348	1	0	0	0	0	1	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0029	3348	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0030	3348	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0031	3348	1	0	0	0	0	1	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0032	3348	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0033	3348	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	t0034	3348	1	0	0	0	0	1	copy fasta	PRUNE2	chr9	76606376	76911114
PRXL2A_chr10_80403551_80442115	0/0	t0001	5121	71	9	22	25	6	9	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	1/1	t0002	5112	33	4	14	8	3	2	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0003	5111	32	1	14	7	2	8	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0004	5113	19	1	0	15	0	3	copy fasta	PRXL2A	chr10	80403551	80442115