JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRXL2A_chr10_80403551_80442115	0/0	t0005	5111	17	15	0	0	0	2	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0006	5113	14	12	2	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0007	5122	7	0	5	1	0	1	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0008	5112	7	2	1	0	1	3	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0009	5120	6	0	2	4	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0010	5113	6	6	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0011	5111	5	4	1	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0012	5122	4	0	0	4	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0013	5118	4	0	0	4	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0014	5111	4	3	1	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0015	5121	4	0	0	4	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0016	5111	4	3	1	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0017	5113	4	4	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0018	5112	3	3	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0019	5119	3	3	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0020	5121	2	0	0	2	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0021	5112	2	2	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0022	5111	2	0	0	0	0	2	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0023	5110	2	0	1	0	0	1	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0024	5111	2	0	2	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0025	5111	2	2	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0026	5122	2	0	0	2	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0027	5111	2	2	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0028	5111	2	2	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0029	5111	2	1	1	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0030	5111	1	0	1	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0031	5121	1	0	0	1	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0032	5123	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0033	5123	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0034	5122	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0035	5121	1	0	0	1	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0036	5114	1	0	0	1	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0037	5121	1	0	1	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0038	5118	1	0	0	1	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0039	5121	1	0	0	1	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0040	5121	1	0	1	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0041	5121	1	0	0	0	0	1	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0042	5118	1	0	0	1	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0043	5119	1	0	0	0	0	1	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0044	5114	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0045	5111	1	0	1	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0046	5112	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0047	5112	1	0	0	0	0	1	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0048	5114	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0049	5114	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0050	5114	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0051	5111	1	0	0	0	0	1	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0052	5111	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0053	5119	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0054	5111	1	0	0	0	0	1	copy fasta	PRXL2A	chr10	80403551	80442115