JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRXL2A_chr10_80403551_80442115	0/0	t0055	5113	1	0	0	0	0	1	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0056	5112	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0057	5112	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0058	5112	1	0	1	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0059	5124	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0060	5114	1	0	0	0	0	1	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0061	5111	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	t0062	5114	1	1	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2B_chr1_2581777_2596468	0/0	t0001	2151	197	71	32	76	4	14	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0002	2151	86	1	16	57	5	7	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/1	t0003	2151	56	17	10	17	3	8	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0004	2151	55	1	11	30	1	12	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0005	2151	3	3	0	0	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0006	2151	1	0	1	0	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0007	2151	1	1	0	0	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0008	2151	1	0	0	0	1	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0009	2151	1	0	0	1	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0010	2151	1	0	0	1	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0011	2151	1	0	0	1	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0012	2151	1	0	1	0	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0013	2151	1	1	0	0	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0014	2151	1	0	0	0	0	1	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0015	2151	1	0	0	0	0	1	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0016	2151	1	0	0	0	0	1	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0017	2151	1	1	0	0	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0018	2151	1	1	0	0	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0019	2151	1	1	0	0	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0020	2151	1	0	1	0	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	t0021	2151	1	0	0	1	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2C_chr9_96634577_96660317	0/0	t0001	2218	92	20	19	39	4	10	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	1/1	t0002	2219	58	9	12	20	4	11	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0003	2217	43	7	17	14	2	3	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0004	2218	15	0	6	4	3	2	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0005	2220	7	7	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0006	2220	6	5	1	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0007	2217	6	5	1	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0008	2220	6	1	2	1	1	1	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0009	2220	6	5	1	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0010	2219	5	5	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0011	2221	5	4	1	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0012	2220	4	4	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0013	2221	3	3	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0014	2219	2	2	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0015	2219	2	1	1	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0016	2218	2	0	0	2	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0017	2219	2	0	0	2	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0018	2219	2	0	0	2	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0019	2219	2	2	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0020	2219	2	2	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0021	2219	1	0	0	1	0	0	copy fasta	PRXL2C	chr9	96634577	96660317