JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PRXL2C_chr9_96634577_96660317	0/0	t0022	2219	1	1	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0023	2217	1	0	0	1	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0024	2218	1	1	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0025	2219	1	1	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0026	2219	1	1	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0027	2222	1	0	1	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0028	2216	1	0	0	0	0	1	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0029	2217	1	0	0	1	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0030	2219	1	0	1	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0031	2218	1	1	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0032	2218	1	0	0	1	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0033	2219	1	0	1	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0034	2218	1	0	0	1	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0035	2222	1	1	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0036	2218	1	0	0	1	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0037	2218	1	0	0	0	0	1	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0038	2221	1	1	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0039	2218	1	1	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	t0040	2218	1	0	0	0	0	1	copy fasta	PRXL2C	chr9	96634577	96660317
PRX_chr19_40388768_40418378	1/1	t0001	482	301	95	65	87	18	34	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	t0002	482	2	0	0	0	0	2	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	t0003	482	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	t0004	482	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	t0005	482	1	0	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRY2_chrY_22066756_22101007	0/0	t0001	795	3	0	0	3	0	0	copy fasta	PRY2	chrY	22066756	22101007
PRY2_chrY_22066756_22101007	0/0	t0002	795	1	0	0	1	0	0	copy fasta	PRY2	chrY	22066756	22101007
PRY_chrY_22485397_22519637	0/0	t0001	795	100	3	19	60	4	14	copy fasta	PRY	chrY	22485397	22519637
PRY_chrY_22485397_22519637	0/0	t0002	795	14	12	0	1	0	1	copy fasta	PRY	chrY	22485397	22519637
PRY_chrY_22485397_22519637	0/0	t0003	796	1	0	0	1	0	0	copy fasta	PRY	chrY	22485397	22519637
PRY_chrY_22485397_22519637	0/0	t0004	795	1	0	0	1	0	0	copy fasta	PRY	chrY	22485397	22519637
PRY_chrY_22485397_22519637	0/0	t0005	794	1	0	0	1	0	0	copy fasta	PRY	chrY	22485397	22519637
PRY_chrY_22485397_22519637	0/0	t0006	795	1	0	0	0	1	0	copy fasta	PRY	chrY	22485397	22519637
PRY_chrY_22485397_22519637	0/0	t0007	795	1	0	0	1	0	0	copy fasta	PRY	chrY	22485397	22519637
PSAPL1_chr4_7425285_7439930	0/0	t0001	3082	104	2	13	73	1	15	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0002	3077	93	10	25	47	2	9	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0003	3077	37	16	7	11	1	2	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/1	t0004	3078	33	3	5	16	4	4	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0005	3082	29	3	14	7	1	4	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0006	3077	25	1	7	6	3	8	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0007	3081	10	9	1	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0008	3082	9	0	0	9	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0009	3077	9	9	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0010	3082	8	0	0	8	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0011	3081	7	6	1	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0012	3078	6	0	4	2	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	1/0	t0013	3081	6	5	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0014	3078	5	5	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0015	3078	4	3	1	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0016	3077	3	3	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	t0017	3077	3	3	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930